Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   GPY18_RS05080 Genome accession   NZ_CP046799
Coordinates   1144534..1146582 (-) Length   682 a.a.
NCBI ID   WP_020432686.1    Uniprot ID   A0AAX2LY86
Organism   Vibrio fluvialis strain 2012V-1235     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 1139534..1151582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY18_RS05065 clcA 1140580..1141977 (+) 1398 WP_020328471.1 H(+)/Cl(-) exchange transporter ClcA -
  GPY18_RS05070 - 1142142..1143098 (+) 957 WP_172558150.1 TDT family transporter -
  GPY18_RS05075 cqsA 1143317..1144498 (+) 1182 WP_024375463.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  GPY18_RS05080 cqsS 1144534..1146582 (-) 2049 WP_020432686.1 hybrid sensor histidine kinase/response regulator Regulator
  GPY18_RS05085 - 1146721..1149762 (-) 3042 WP_158146264.1 SMC family ATPase -
  GPY18_RS05090 - 1149766..1150908 (-) 1143 WP_158146265.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 79191.80 Da        Isoelectric Point: 5.3014

>NTDB_id=407989 GPY18_RS05080 WP_020432686.1 1144534..1146582(-) (cqsS) [Vibrio fluvialis strain 2012V-1235]
MEVVKKIYQYAEPNLTLVGWMGFIGFPLYYYIWQYVFPQPYESLLLRSFCSCLFGGIAFRNSVPKLWQRYLPYYYLFMIG
FCLPFFFAYMMLMNDWSTVWAMSFMASIFLHILLVHETKVMLLQAAISILAAYGAVYWIQHYEPQQYILWPYVPIFLFTY
VFGNLFYFRNQSSHESKVSIAKSFGAGIAHEMRNPLSALKSSVDVLRSILPAQNNISRGAHIDEQDLTLLHEILDNADDV
IHTGNETIDLLLTSIDENRVSRSTFRKQSAREVVDYALHSFSYKRAIDRQSVTLVVEDDFDYFGSDTLLKFALYNLLKNA
FYYQNSEQFHIDVTLKTQGNQNLIVVKDNGVGIAPDRIDDIFKDFYTFGKNGSYGLGLPFCRKVMKSFGGNIACASVLGE
WTEFTLSFPLYESQEVSHIKLDLMKNKSVLYIGTQGLMSRHLSETSFYQGFRLHLVTLQEALVREEYEFEYDAIVLDLEQ
IEDHWQSVVELESKLHFTEAQIVYLFDKQREYPINIERHLRVTPLDIRQMLRDTDKELDKLFFDVAELVQDRNVIPQKKQ
TYERRILVVDDNQSLRTFTALMLEKQGYEVVQANDGQQALDAVESSDFDLILMDIEMPFIDGIEATRVIRDSDKPYRHIP
IVGHTGDNSPMTIEKIHKSGMNDYIVKPADKDKLLGKLANWI

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=407989 GPY18_RS05080 WP_020432686.1 1144534..1146582(-) (cqsS) [Vibrio fluvialis strain 2012V-1235]
ATGGAAGTAGTAAAGAAAATTTACCAGTATGCTGAGCCTAACCTCACCCTCGTGGGGTGGATGGGCTTTATTGGTTTTCC
ACTCTACTACTATATTTGGCAGTACGTCTTTCCACAGCCATACGAATCGTTGCTGCTACGCAGCTTTTGTTCGTGTTTGT
TCGGTGGCATCGCGTTTCGTAATTCCGTGCCCAAATTGTGGCAGCGGTATCTGCCGTATTATTACCTGTTTATGATAGGT
TTCTGCCTGCCATTCTTTTTCGCTTATATGATGCTGATGAATGACTGGTCGACCGTATGGGCGATGTCCTTTATGGCATC
AATATTCCTGCACATTCTGCTGGTGCATGAGACCAAAGTTATGCTGCTCCAGGCCGCGATATCCATATTGGCAGCCTACG
GTGCGGTGTATTGGATTCAGCACTATGAGCCGCAACAGTATATTTTGTGGCCGTACGTACCGATTTTCCTATTCACCTAT
GTGTTTGGTAACCTGTTTTATTTCAGAAACCAGAGCTCTCACGAATCAAAAGTCTCCATTGCCAAATCGTTCGGTGCGGG
CATCGCACATGAAATGCGTAACCCGCTGAGTGCATTGAAGTCATCGGTTGATGTATTGCGCTCCATTCTTCCGGCTCAAA
ACAACATCTCACGTGGCGCGCATATTGATGAGCAAGATCTGACGTTGCTGCATGAGATTCTCGATAATGCCGACGACGTT
ATTCACACCGGTAATGAAACCATCGATCTGTTACTGACCTCGATCGATGAGAACCGAGTATCGCGTTCCACGTTCAGGAA
GCAGTCGGCGCGCGAAGTCGTTGACTATGCGTTGCATTCGTTCTCCTATAAGCGTGCGATTGATCGTCAATCGGTGACTT
TAGTGGTCGAGGACGACTTCGACTATTTCGGCAGTGATACGCTGTTGAAATTTGCACTGTATAACTTGCTGAAAAACGCG
TTCTATTATCAGAACAGCGAGCAGTTCCATATTGATGTCACCCTGAAAACCCAGGGCAATCAGAACCTCATCGTGGTCAA
AGATAACGGCGTAGGCATTGCGCCGGATCGCATCGACGATATCTTTAAAGATTTTTATACCTTCGGTAAAAATGGCAGCT
ACGGACTTGGATTACCCTTCTGCCGCAAAGTGATGAAATCTTTTGGCGGTAACATTGCGTGTGCATCGGTGCTGGGGGAA
TGGACCGAATTTACTCTGAGTTTCCCTCTGTATGAGTCGCAGGAAGTCTCACACATCAAACTGGATCTGATGAAAAATAA
ATCCGTTCTGTATATTGGAACACAAGGATTAATGAGTCGCCATTTGAGTGAGACATCGTTTTATCAGGGATTCCGTCTGC
ACCTTGTGACGTTGCAGGAAGCTCTGGTACGCGAAGAGTATGAATTCGAATATGATGCCATTGTGCTGGATCTCGAACAG
ATTGAAGATCACTGGCAATCGGTGGTCGAACTGGAAAGTAAACTGCACTTTACTGAAGCGCAAATTGTCTACCTGTTTGA
TAAACAGCGGGAATATCCGATCAATATTGAGCGCCATTTACGCGTAACGCCGCTGGACATTCGTCAGATGTTACGGGATA
CGGACAAAGAACTGGACAAGCTGTTCTTTGATGTCGCGGAACTGGTTCAGGATCGCAACGTGATTCCGCAGAAGAAACAG
ACGTATGAACGCCGTATTCTGGTGGTGGATGATAACCAGTCGTTGCGTACCTTCACTGCGTTGATGCTAGAAAAGCAGGG
TTATGAAGTGGTACAGGCAAATGATGGTCAACAGGCGTTGGATGCGGTCGAGAGCAGCGATTTCGATTTGATCCTGATGG
ATATCGAAATGCCGTTTATCGATGGCATAGAAGCAACACGGGTTATTCGTGATTCGGACAAGCCGTACCGCCACATTCCT
ATTGTCGGGCATACGGGCGATAACAGCCCGATGACGATCGAAAAAATTCATAAATCGGGCATGAACGACTACATCGTTAA
ACCCGCTGATAAAGACAAACTACTTGGTAAACTGGCAAACTGGATCTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

59.004

100

0.591

Multiple sequence alignment