Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SSUD9_RS07710 Genome accession   NC_017620
Coordinates   1575905..1576588 (-) Length   227 a.a.
NCBI ID   WP_002936735.1    Uniprot ID   -
Organism   Streptococcus suis D9     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1570905..1581588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSUD9_RS07690 (SSUD9_1588) - 1571194..1572483 (-) 1290 WP_014636745.1 IS4-like element ISSsu2 family transposase -
  SSUD9_RS07695 (SSUD9_1589) - 1572567..1574072 (-) 1506 Protein_1481 ABC transporter permease -
  SSUD9_RS07700 (SSUD9_1590) - 1574074..1574832 (-) 759 WP_022540669.1 ABC transporter ATP-binding protein -
  SSUD9_RS07705 (SSUD9_1591) - 1574930..1575643 (-) 714 WP_234944234.1 sensor histidine kinase -
  SSUD9_RS11650 - 1575619..1575912 (-) 294 WP_234944235.1 hypothetical protein -
  SSUD9_RS07710 (SSUD9_1593) braR 1575905..1576588 (-) 684 WP_002936735.1 response regulator transcription factor Regulator
  SSUD9_RS07715 (SSUD9_1594) - 1576758..1577543 (+) 786 WP_234944236.1 DUF2974 domain-containing protein -
  SSUD9_RS11655 - 1577667..1577927 (+) 261 WP_234944237.1 hypothetical protein -
  SSUD9_RS07720 (SSUD9_1596) - 1577942..1579066 (-) 1125 WP_014637088.1 aminotransferase -
  SSUD9_RS07725 (SSUD9_1597) - 1579214..1579975 (-) 762 Protein_1489 nuclear transport factor 2 family protein -
  SSUD9_RS07730 (SSUD9_1599) - 1579987..1581498 (-) 1512 WP_014637089.1 ABC transporter permease/substrate-binding protein -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26523.77 Da        Isoelectric Point: 4.6132

>NTDB_id=40797 SSUD9_RS07710 WP_002936735.1 1575905..1576588(-) (braR) [Streptococcus suis D9]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=40797 SSUD9_RS07710 WP_002936735.1 1575905..1576588(-) (braR) [Streptococcus suis D9]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GTCTGCCGTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTGTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTAGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAGCTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAACATTGCTCGCCTGCGTAAGAAATTGGCAGAACTGGGTCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463
  vicR Streptococcus mutans UA159

39.13

100

0.396
  micA Streptococcus pneumoniae Cp1015

37.991

100

0.383

Multiple sequence alignment