Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPY38_RS15250 Genome accession   NZ_CP046795
Coordinates   3284436..3285068 (-) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio furnissii strain 2420-04     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3279436..3290068
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY38_RS15230 - 3279552..3280763 (+) 1212 WP_055465829.1 aspartate aminotransferase family protein -
  GPY38_RS15235 astA 3280863..3281882 (+) 1020 WP_004728579.1 arginine N-succinyltransferase -
  GPY38_RS15240 astD 3281916..3283373 (+) 1458 WP_158141370.1 succinylglutamate-semialdehyde dehydrogenase -
  GPY38_RS15245 - 3283559..3284353 (+) 795 WP_158141371.1 DUF1338 domain-containing protein -
  GPY38_RS15250 crp 3284436..3285068 (-) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPY38_RS15255 - 3285311..3286180 (-) 870 WP_004728583.1 phosphoribulokinase -
  GPY38_RS15260 - 3286275..3286484 (-) 210 WP_004728584.1 YheU family protein -
  GPY38_RS15265 - 3286573..3287550 (-) 978 WP_004728585.1 hydrolase -
  GPY38_RS15270 - 3287678..3288151 (-) 474 WP_004728586.1 TIGR02444 family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=407929 GPY38_RS15250 WP_004728582.1 3284436..3285068(-) (crp) [Vibrio furnissii strain 2420-04]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=407929 GPY38_RS15250 WP_004728582.1 3284436..3285068(-) (crp) [Vibrio furnissii strain 2420-04]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCACGCGGGCGAGAAAGCAGAAACGTTGTACTACATCGTCAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTCAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCGGAAATTTCATTTAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTGATGCGCCTGTCTGGTCAGATGGCTCGCCGTCTGCAAGTGACCAGTCAAAAAGTAGGTG
ACTTGGCGTTCTTAGACGTAACCGGTCGTATTGCACAGACCCTACTGAACTTGGCGAAACAACCCGACGCGATGACTCAC
CCAGACGGCATGCAGATTAAGATCACTCGTCAAGAGATTGGTCAAATCGTTGGCTGTTCACGTGAAACCGTGGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCACACGGTAAAACCATCGTGGTGTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment