Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPY38_RS08110 Genome accession   NZ_CP046795
Coordinates   1755477..1757717 (-) Length   746 a.a.
NCBI ID   WP_238795734.1    Uniprot ID   -
Organism   Vibrio furnissii strain 2420-04     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1750477..1762717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY38_RS08090 kdsB 1751782..1752525 (-) 744 WP_014205388.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPY38_RS08095 - 1752525..1752704 (-) 180 WP_004726449.1 Trm112 family protein -
  GPY38_RS08100 lpxK 1752685..1753692 (-) 1008 WP_158140933.1 tetraacyldisaccharide 4'-kinase -
  GPY38_RS08105 msbA 1753696..1755444 (-) 1749 WP_004726451.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPY38_RS08110 comEC 1755477..1757717 (-) 2241 WP_238795734.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPY38_RS08115 - 1757726..1758256 (+) 531 WP_004726453.1 DUF2062 domain-containing protein -
  GPY38_RS08120 lolE 1758393..1759637 (-) 1245 WP_158140934.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPY38_RS08125 lolD 1759638..1760324 (-) 687 WP_014205392.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPY38_RS08130 lolC 1760317..1761525 (-) 1209 WP_055466342.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GPY38_RS08135 - 1761701..1762270 (+) 570 WP_158140935.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 83213.86 Da        Isoelectric Point: 9.6299

>NTDB_id=407904 GPY38_RS08110 WP_238795734.1 1755477..1757717(-) (comEC) [Vibrio furnissii strain 2420-04]
MTLYSNYWMLISFSLTVLSAPYWPRMPSWDFAFICLVALMGTVLVTRLRGWGGIAFAVLVIVTHGNVMRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGNEGSIVVRSINGQQLPTFRQPIVRLVAPIALHIGDQVTFSVTVKPIYGRLNETGFDIEAYYL
SQGWVARATVKPQSAFSVVSRPSWRDTLHQKIQVATQHLQAQGMILALTFGDRNGIQEDDWRALRDSGLIHLVAISGLHI
GMAFAVGYLLGSVLMRIHVNALWLPWIVGLLMATVYAWLAGFTLPTQRALLMCTLNVLLTMSGWRITAVQRILLTLGALL
LVSPFAPLSMSFWLSFLAVSVVLYQLASRSSTQRGWRQLVMTQCTLVLLMTPISALFFSGFSLSSALYNLVFIPWFSVVI
VPLLFLGLVLTSLFEQVDWIWTLIDLSFWPLSQALTLSESSWVAVSHATTFVLCAGGIGWVLRPLLSRDARIAVVLLALG
MWAFNSPKDRWRIDVLDVGHGLAVLIERQQRVLLYDTGSGWPDGSYVRSLVVPLLHQRGVHQLDGLIISHMDSDHAGGLA
DAQQWLSPSWILASQRQPQWRTCVAGQQWDWQGLRLQALWPPKTVSRAHNVHSCVLRLSDPEYGHSVLLAGDVTAVGEWL
LSRQAKDIKSDIIIVPHHGSKTSSTARFIEHVAPQVAIASLAKGNQWHLPDQDVVQRYQATGAKWLDTGEAGQITLSYRA
ETRLLSTLRQSGYPPWYRQMLRKGVE

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=407904 GPY38_RS08110 WP_238795734.1 1755477..1757717(-) (comEC) [Vibrio furnissii strain 2420-04]
ATGACTCTCTATTCGAATTATTGGATGCTCATTTCGTTCTCGCTCACCGTCTTGTCTGCACCCTATTGGCCGCGGATGCC
AAGTTGGGATTTTGCATTCATTTGCCTTGTCGCTCTGATGGGCACCGTATTAGTCACTCGGCTCAGAGGATGGGGCGGGA
TCGCGTTTGCCGTGTTAGTGATAGTAACACATGGCAACGTAATGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAGGTTGACAGCTTTTTTAAGCAAATAAGTTACGGGAATGAAGGCAGTATCGTGGTGAGATC
AATTAACGGTCAACAATTGCCCACCTTTCGTCAACCGATTGTCCGATTAGTCGCGCCCATTGCGCTCCATATCGGCGATC
AGGTGACGTTTTCAGTCACGGTGAAACCGATTTATGGACGCCTCAATGAAACCGGATTTGATATAGAAGCATACTATCTC
AGCCAAGGTTGGGTTGCTCGCGCGACCGTCAAACCGCAGTCGGCGTTTTCGGTCGTCTCTCGACCCAGCTGGCGGGACAC
TTTGCACCAAAAAATCCAAGTTGCTACGCAACATCTCCAAGCACAAGGCATGATTTTGGCGCTGACGTTTGGCGATCGCA
ATGGCATTCAGGAAGATGACTGGCGTGCGCTTCGCGACAGCGGATTAATCCATTTGGTTGCGATATCTGGATTGCACATC
GGCATGGCTTTCGCTGTGGGTTATTTGTTGGGAAGCGTGTTGATGCGCATCCACGTGAACGCGCTGTGGCTGCCATGGAT
CGTCGGTCTGCTGATGGCCACGGTGTACGCGTGGTTAGCTGGATTTACCTTGCCGACACAGCGCGCGTTGCTCATGTGTA
CGCTGAATGTGCTATTGACCATGAGCGGGTGGCGCATCACGGCTGTGCAGCGCATTCTGTTGACACTGGGCGCGTTGCTG
CTGGTGTCGCCATTTGCGCCGCTGTCGATGAGTTTTTGGTTGTCGTTCTTGGCCGTCTCGGTCGTGCTGTATCAGCTCGC
GAGTCGCTCATCGACACAACGTGGGTGGCGACAGCTTGTCATGACACAGTGCACGTTGGTTCTATTGATGACGCCGATCT
CTGCGCTGTTTTTCTCTGGTTTTAGCCTATCGTCGGCGCTCTACAACTTGGTGTTTATTCCGTGGTTCAGTGTGGTGATT
GTGCCGCTGCTGTTCTTGGGGTTGGTCCTGACGTCGTTGTTTGAGCAAGTCGATTGGATATGGACGCTGATTGATCTCAG
CTTTTGGCCTTTGAGTCAGGCATTAACACTCTCTGAATCCAGTTGGGTGGCAGTCAGCCATGCCACCACATTCGTGTTGT
GCGCTGGCGGGATCGGTTGGGTGCTGCGTCCACTGCTGAGTCGCGATGCACGAATTGCTGTGGTACTACTCGCGCTTGGC
ATGTGGGCATTCAATTCGCCCAAGGATCGCTGGCGCATTGATGTGCTTGATGTCGGCCATGGTCTGGCGGTGCTGATTGA
GCGCCAGCAGCGCGTGTTGCTTTATGACACCGGCAGTGGTTGGCCTGATGGCAGTTACGTGCGCTCACTGGTGGTGCCAC
TGCTTCACCAACGTGGCGTGCATCAACTGGATGGGTTGATTATCAGTCATATGGATAGCGATCATGCCGGCGGTTTGGCG
GATGCGCAGCAATGGTTGTCTCCGTCATGGATACTGGCCAGTCAACGTCAACCTCAATGGCGAACGTGTGTTGCAGGGCA
ACAATGGGATTGGCAGGGGCTGAGATTACAGGCGTTGTGGCCGCCGAAAACGGTCTCGCGCGCGCACAATGTGCACTCCT
GCGTGCTGAGGCTCAGCGATCCTGAATATGGTCATTCCGTGTTGTTGGCTGGCGATGTGACGGCAGTCGGTGAGTGGTTA
CTCAGTCGCCAAGCCAAAGATATCAAGAGCGATATCATTATTGTGCCGCATCATGGTAGCAAAACTTCCTCGACCGCTCG
CTTTATCGAACACGTGGCGCCGCAGGTGGCAATCGCCTCGTTGGCCAAAGGCAATCAATGGCATCTGCCCGATCAAGACG
TGGTTCAACGCTATCAAGCGACTGGGGCAAAGTGGCTGGATACGGGGGAGGCGGGGCAAATCACCCTCAGCTATCGCGCA
GAAACTCGTCTATTATCAACATTGCGCCAGTCAGGATATCCCCCTTGGTATAGGCAGATGCTACGTAAAGGGGTAGAATG
A

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-462)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(33-173)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

54.244

100

0.548
  comEC Vibrio campbellii strain DS40M4

43.008

100

0.437
  comEC Vibrio parahaemolyticus RIMD 2210633

42.348

100

0.43

Multiple sequence alignment