Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPX86_RS09580 Genome accession   NZ_CP046793
Coordinates   2150565..2151197 (-) Length   210 a.a.
NCBI ID   WP_004394497.1    Uniprot ID   A0A7X4XR47
Organism   Vibrio metschnikovii strain 9502-00     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2145565..2156197
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS09560 - 2145771..2146982 (+) 1212 WP_004394493.1 aspartate aminotransferase family protein -
  GPX86_RS09565 astA 2147080..2148099 (+) 1020 WP_040903963.1 arginine N-succinyltransferase -
  GPX86_RS09570 astD 2148121..2149581 (+) 1461 WP_158144639.1 succinylglutamate-semialdehyde dehydrogenase -
  GPX86_RS09575 - 2149673..2150467 (+) 795 WP_158144640.1 DUF1338 domain-containing protein -
  GPX86_RS09580 crp 2150565..2151197 (-) 633 WP_004394497.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPX86_RS09585 - 2151489..2152358 (-) 870 WP_004394498.1 phosphoribulokinase -
  GPX86_RS09590 - 2152454..2152663 (-) 210 WP_004394499.1 YheU family protein -
  GPX86_RS09595 - 2152748..2153716 (-) 969 WP_158144641.1 hydrolase -
  GPX86_RS09600 - 2153742..2154212 (-) 471 WP_154170012.1 TIGR02444 family protein -
  GPX86_RS09605 - 2154212..2156131 (-) 1920 WP_158144642.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23651.45 Da        Isoelectric Point: 7.8388

>NTDB_id=407882 GPX86_RS09580 WP_004394497.1 2150565..2151197(-) (crp) [Vibrio metschnikovii strain 9502-00]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=407882 GPX86_RS09580 WP_004394497.1 2150565..2151197(-) (crp) [Vibrio metschnikovii strain 9502-00]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTCCTTTCACATTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTGATCCATGCGGGCGAAAAAGCGGAAACCTTGTACTACATTGTTAAAGGTTCTGTTGCGGTACTGATTAAAG
ACGAAGAAGGTAAAGAGATGATTCTTTCTTACCTTAACCAAGGTGATTTCATCGGCGAGCTTGGTCTGTTCGAAGAAGAT
CAAGAACGTACCGCTTGGGTTCGAGCTAAATCCCCTTGTGAAGTCGCGGAAATTTCTTTTAAGAAGTTCCGTCAATTGAT
TCAAGTTAACCCCGATATCCTGATGCGTCTATCAGGGCAAATGGCTCGTCGCCTACAAGTGACCAGCCAAAAAGTCGGTG
ATTTGGCGTTCCTTGATGTGACTGGTCGTATTGCACAAACTCTACTAAACCTAGCAAAACAACCCGATGCAATGACTCAC
CCTGATGGGATGCAAATCAAAATCACTCGTCAAGAAATTGGTCAAATCGTTGGTTGCTCTCGTGAAACCGTTGGCCGGAT
TCTGAAAATGCTTGAAGAGCAAAATCTGATATCAGCACACGGTAAAACCATCGTGGTCTACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4XR47

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.571

100

0.986
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment