Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   HZZ00_RS05835 Genome accession   NZ_CP058977
Coordinates   1292288..1293427 (+) Length   379 a.a.
NCBI ID   WP_374028516.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-sy36     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 1287288..1298427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZZ00_RS05820 (HZZ00_05820) - 1287611..1288885 (+) 1275 WP_180331203.1 deoxyguanosinetriphosphate triphosphohydrolase -
  HZZ00_RS05825 (HZZ00_05825) - 1288990..1290255 (+) 1266 WP_180331204.1 NAD(P)/FAD-dependent oxidoreductase -
  HZZ00_RS05830 (HZZ00_05830) dnaG 1290302..1292209 (+) 1908 WP_180331205.1 DNA primase -
  HZZ00_RS05835 (HZZ00_05835) rpoS 1292288..1293427 (+) 1140 WP_374028516.1 RNA polymerase sigma factor Regulator
  HZZ00_RS05840 (HZZ00_05840) rcrQ 1293476..1295404 (-) 1929 WP_180331206.1 ABC transporter ATP-binding protein Regulator
  HZZ00_RS05845 (HZZ00_05845) rcrP 1295404..1297137 (-) 1734 WP_180331207.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 42203.07 Da        Isoelectric Point: 5.0504

>NTDB_id=407869 HZZ00_RS05835 WP_374028516.1 1292288..1293427(+) (rpoS) [Streptomyces sp. NEAU-sy36]
MCRTPHCWGCPSPVNILEVALVQTQTLTPADSSTGARADEPDTEPDVEPDVEPDAEPDVLPVVPPQGRASLHPENGGPTA
DLFRQYLREIGRIPLLTAAEEVELARRVEAGLFAEEKLGNTPDLDSGLAHDLDRLVVMGRVAKRRLIEANLRLVVSVAKR
YVGRGLTMLDLVQEGNLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRHMLQE
RGYEPTPEEVAAHLDLSPERVGEVLRLAQEPVSLHAPVGEEDDVALGDLIEDGDAASPVESAAFLLLKQHLEAVLSTLGE
RERKVVQLRYGLLDGRPRTLEEIGRLFGVTRERIRQIESKTLAKLRDHAYADQLRGYLD

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=407869 HZZ00_RS05835 WP_374028516.1 1292288..1293427(+) (rpoS) [Streptomyces sp. NEAU-sy36]
ATGTGCCGTACCCCACACTGTTGGGGGTGCCCGAGTCCGGTGAACATCCTGGAGGTCGCCCTCGTGCAGACCCAGACCCT
CACCCCCGCCGACAGCAGCACCGGTGCCCGCGCGGACGAACCGGACACGGAGCCGGACGTGGAGCCGGACGTGGAGCCGG
ACGCGGAGCCGGACGTCCTGCCGGTCGTTCCCCCGCAGGGCCGTGCTTCCCTGCATCCGGAGAACGGGGGACCCACCGCC
GACCTGTTCCGGCAGTACCTGCGCGAGATCGGCCGCATCCCGCTGCTCACCGCGGCCGAGGAGGTCGAACTCGCCCGCCG
GGTGGAGGCCGGCCTGTTCGCGGAGGAGAAGCTGGGCAACACCCCCGACCTGGACAGCGGGCTGGCGCACGATCTGGACC
GGCTGGTGGTCATGGGGCGGGTGGCCAAGCGACGGCTGATCGAGGCCAACCTGCGGCTCGTCGTGTCCGTCGCCAAGCGG
TACGTGGGGCGCGGGCTGACCATGCTCGACCTCGTCCAGGAGGGCAACCTCGGGCTCATCCGCGCCGTGGAGAAGTTCGA
CTACGCCCGCGGCTACAAGTTCTCCACCTACGCCACCTGGTGGATCCGCCAGGCCATGTCCCGCGCCCTCGCCGACCAGG
CCCGCACCATCCGCGTGCCGGTGCACGTCGTGGAGCTGATCAACCGGGTGGTACGGGTGCAGCGCCACATGCTCCAGGAG
CGGGGGTACGAGCCGACGCCCGAGGAGGTCGCCGCCCACCTCGACCTGTCGCCCGAGCGGGTCGGCGAGGTGCTGCGCCT
CGCCCAGGAGCCGGTCTCGCTGCACGCCCCGGTCGGCGAGGAGGACGACGTGGCGCTCGGCGACCTCATCGAGGACGGCG
ACGCCGCGAGCCCCGTGGAGTCCGCCGCGTTCCTCCTGCTCAAGCAGCACCTGGAGGCGGTGCTGTCCACGCTGGGCGAG
CGCGAGCGCAAGGTCGTACAGCTGCGCTACGGCCTCCTCGACGGCCGCCCCCGCACCCTGGAGGAGATCGGCCGCCTCTT
CGGCGTCACCCGCGAACGCATACGCCAGATCGAGTCCAAGACCCTCGCCAAGCTCAGGGACCACGCCTACGCGGACCAGC
TGAGGGGCTACCTGGACTGA

Domains

Predicted by InterProScan.

Sigma-70, region 4 (Sigma70_r4)

(314-366)

Sigma-70 region 2 (Sigma70_r2)

(146-215)

Sigma-70 region 3 (Sigma70_r3)

(225-301)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(81-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

40.294

89.71

0.361