Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HZZ00_RS05845 Genome accession   NZ_CP058977
Coordinates   1295404..1297137 (-) Length   577 a.a.
NCBI ID   WP_180331207.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-sy36     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1290404..1302137
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZZ00_RS05835 (HZZ00_05835) rpoS 1292288..1293427 (+) 1140 WP_374028516.1 RNA polymerase sigma factor Regulator
  HZZ00_RS05840 (HZZ00_05840) rcrQ 1293476..1295404 (-) 1929 WP_180331206.1 ABC transporter ATP-binding protein Regulator
  HZZ00_RS05845 (HZZ00_05845) rcrP 1295404..1297137 (-) 1734 WP_180331207.1 ABC transporter ATP-binding protein Regulator
  HZZ00_RS05850 (HZZ00_05850) - 1297301..1298749 (-) 1449 WP_180331208.1 FGGY family carbohydrate kinase -
  HZZ00_RS05855 (HZZ00_05855) - 1298804..1299109 (-) 306 WP_180331209.1 YtxH domain-containing protein -
  HZZ00_RS05875 (HZZ00_05875) - 1299894..1300961 (+) 1068 WP_180331210.1 acyl-CoA desaturase -
  HZZ00_RS05880 (HZZ00_05880) - 1301265..1301951 (-) 687 WP_180331211.1 ANTAR domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62846.29 Da        Isoelectric Point: 7.0897

>NTDB_id=407871 HZZ00_RS05845 WP_180331207.1 1295404..1297137(-) (rcrP) [Streptomyces sp. NEAU-sy36]
MLIRLLRTYLRPYKKPITLQVLLQFVQTCATLYLPTLNAHIIDNGVVKGDTGYILSFGALMIGISLVQVVCNIGAVYLGA
RTASALGRDVRGAVFDRVQSFSAREVGHFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIVLALGLDVPLSGV
LVAVVPVLAICVTLIVRRLRPLFRTMQTRLDKVNRVLREQITGNRVIRAFVRDEYEQARFGRVNGELTEMQLATGRLLSL
MFPMVMTVVNVSSIAVVWFGAHRIDSGGMQIGDLTAFLAYLMQIVMSVMMATFMFMMVPRAEVCAERIQEVLETGSSVLP
PLTPVTELRRHGHLEIRAAGFRYPGAEEPVLRSVELVARPGETTAVIGSTGSGKSTLLGLVPRLFDATEGEVLVNGVDVR
EVEPALLARTVGLVPQKPYLFAGTVATNLRYGNPDATDEELWHALEVAQAKEFVTRLEGGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETAEATVVIVAQRVATIRDADRIIVLDEGRVVGSGRHQELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=407871 HZZ00_RS05845 WP_180331207.1 1295404..1297137(-) (rcrP) [Streptomyces sp. NEAU-sy36]
GTGCTCATACGACTTCTACGGACCTATCTCAGGCCCTACAAGAAACCCATCACCTTGCAGGTGCTGCTCCAGTTCGTGCA
GACCTGCGCCACCCTGTACCTGCCCACCCTGAACGCCCACATCATCGACAACGGCGTCGTGAAGGGCGACACGGGCTACA
TCCTGTCGTTCGGCGCCCTGATGATCGGCATCTCGCTGGTGCAGGTCGTGTGCAACATCGGTGCCGTGTACCTGGGCGCG
CGGACCGCCTCTGCGCTCGGCCGGGACGTGCGCGGTGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGCGAGGTGGG
CCACTTCGGCGCGCCCTCGCTCATCACCCGTACGACCAACGACGTGCAGCAGGTCCAGATGCTGGTCCTGATGACGTTCA
CACTGATGGTGTCGGCGCCCATCATGTGCGTCGGCGGCATCGTGCTGGCCCTCGGCCTGGACGTGCCGCTGTCCGGGGTG
CTGGTCGCGGTCGTCCCGGTGCTGGCCATCTGCGTGACGCTGATCGTGCGCCGGCTGCGGCCGCTGTTCCGCACCATGCA
GACCCGCCTCGACAAGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGCAGGCCCGCTTCGGGCGGGTCAACGGCGAGCTGACCGAGATGCAGCTGGCCACCGGACGGCTGCTGTCGCTG
ATGTTCCCGATGGTGATGACGGTGGTGAACGTGTCGTCCATCGCGGTGGTGTGGTTCGGCGCGCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGACCTGACCGCGTTCCTCGCCTATCTGATGCAGATCGTGATGTCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCGGAGGTGTGCGCCGAGCGCATCCAGGAGGTACTGGAGACCGGTTCCAGCGTGCTGCCG
CCGCTCACGCCGGTCACCGAGCTGCGCCGGCACGGGCACCTGGAGATCCGCGCGGCCGGCTTCCGCTATCCGGGTGCCGA
GGAGCCGGTGCTGCGCTCCGTCGAGCTGGTGGCCCGGCCCGGCGAGACCACGGCCGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACCCTGCTCGGGCTGGTCCCCCGGCTGTTCGACGCCACCGAGGGCGAGGTCCTGGTGAACGGCGTGGACGTCCGC
GAGGTCGAGCCGGCGCTGCTGGCCCGGACGGTCGGGCTGGTCCCGCAGAAGCCGTACCTGTTCGCGGGCACCGTCGCCAC
CAACCTGCGCTACGGCAATCCGGACGCCACGGACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCCAAGGAGTTCG
TGACCAGGCTGGAGGGCGGTCTGGACGCGCCGATCGCCCAGGGCGGCACCAATGTGTCGGGCGGCCAGCGCCAGCGGCTC
GCCATCGCGCGCACCCTCGTGCAGCGCCCCGAGATCTACCTCTTCGACGACTCCTTCTCCGCGCTCGACTACGCCACCGA
CGCGGCCCTGCGCGCTGCCTTGGCCCGGGAGACCGCGGAGGCGACCGTCGTGATCGTCGCCCAGCGGGTGGCGACCATCC
GGGACGCGGACCGGATCATCGTCCTGGACGAGGGCCGGGTGGTCGGCTCCGGCCGGCACCAGGAGCTGATGGCGGGCAAC
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCCTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(18-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.275

100

0.406