Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HZZ00_RS05840 Genome accession   NZ_CP058977
Coordinates   1293476..1295404 (-) Length   642 a.a.
NCBI ID   WP_180331206.1    Uniprot ID   -
Organism   Streptomyces sp. NEAU-sy36     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1288476..1300404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZZ00_RS05825 (HZZ00_05825) - 1288990..1290255 (+) 1266 WP_180331204.1 NAD(P)/FAD-dependent oxidoreductase -
  HZZ00_RS05830 (HZZ00_05830) dnaG 1290302..1292209 (+) 1908 WP_180331205.1 DNA primase -
  HZZ00_RS05835 (HZZ00_05835) rpoS 1292288..1293427 (+) 1140 WP_374028516.1 RNA polymerase sigma factor Regulator
  HZZ00_RS05840 (HZZ00_05840) rcrQ 1293476..1295404 (-) 1929 WP_180331206.1 ABC transporter ATP-binding protein Regulator
  HZZ00_RS05845 (HZZ00_05845) rcrP 1295404..1297137 (-) 1734 WP_180331207.1 ABC transporter ATP-binding protein Regulator
  HZZ00_RS05850 (HZZ00_05850) - 1297301..1298749 (-) 1449 WP_180331208.1 FGGY family carbohydrate kinase -
  HZZ00_RS05855 (HZZ00_05855) - 1298804..1299109 (-) 306 WP_180331209.1 YtxH domain-containing protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 69422.94 Da        Isoelectric Point: 6.1454

>NTDB_id=407870 HZZ00_RS05840 WP_180331206.1 1293476..1295404(-) (rcrQ) [Streptomyces sp. NEAU-sy36]
MAGPMGRMMAGGSPDQRSMDFKGSGKRLVAQFRPERATVCLLLLCVVVSVTLSVVGPKILGKATDLVFAGIIGRQMPAGA
TKAQVLAGMRAEGKGSVADMLQSTDFTPGKGIDFGAVGEVLLLALGTFLVAGLLMAVATRLVNRTVNRTMYRLRESVQTK
LSRLPLSYFDKRQRGEVLSRATNDIDNIGQTLQQSMGQLINSVLTIVGVLVMMFYVSWILALVALVTVPLSFVVATRVGK
RSQPHFVQQWRSTGALNAHVEEMYTGHTLVKVFGRQEESAKQFAEQNEALYQAAFKAQFNSGVMQPLMMFVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVFELLDAEEQEADPVPGERPERLRGRVELE
HVSFRYDPDKPLIEDLSLTVEPGHTVAIVGPTGAGKTTLVNLLMRFYDVSGGRITLDGVDVRRMTRDELRSGIGMVLQDT
WLFGGTIAENIAYGASREVTQGEIEEAARAAHADRFIRTLPEGYDTVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMAKLAAGRTSFVIAHRLSTIRDADTILVMENGSIVEQGAHADLLAADGAYARLYQAQFAQAVAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=407870 HZZ00_RS05840 WP_180331206.1 1293476..1295404(-) (rcrQ) [Streptomyces sp. NEAU-sy36]
ATGGCCGGGCCCATGGGACGCATGATGGCCGGGGGGAGTCCCGACCAGCGGTCGATGGACTTCAAGGGGTCCGGCAAACG
GCTGGTCGCCCAGTTCCGGCCCGAACGGGCCACCGTCTGCCTGCTGCTGCTGTGCGTGGTCGTCAGCGTGACGCTGAGCG
TGGTCGGCCCGAAGATCCTGGGCAAGGCCACCGACCTGGTGTTCGCCGGCATCATCGGCCGGCAGATGCCCGCCGGGGCC
ACCAAGGCGCAGGTGCTGGCCGGGATGCGGGCCGAGGGCAAGGGCTCCGTCGCGGACATGCTCCAGAGCACCGACTTCAC
GCCCGGCAAGGGCATCGACTTCGGGGCGGTCGGCGAGGTGCTGCTGCTGGCGCTCGGCACCTTCCTCGTCGCCGGTCTGC
TGATGGCCGTCGCCACCCGGCTGGTCAACCGGACGGTGAACCGCACGATGTACCGGCTGCGCGAGTCCGTGCAGACGAAG
CTGTCGCGGCTGCCGCTGTCGTACTTCGACAAGCGCCAGCGCGGCGAGGTGCTGTCGCGGGCCACCAACGACATCGACAA
CATCGGGCAGACGCTCCAGCAGTCGATGGGCCAGCTGATCAACTCGGTGCTGACCATCGTCGGCGTGCTGGTGATGATGT
TCTACGTCTCCTGGATCCTGGCGCTGGTCGCGCTGGTGACCGTGCCGCTGTCCTTCGTCGTCGCCACCCGGGTCGGCAAG
CGCTCGCAGCCGCACTTCGTGCAGCAGTGGCGTTCGACGGGCGCGCTCAACGCCCACGTGGAGGAGATGTACACCGGGCA
CACGCTGGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGCAGAACGAGGCGCTGTACCAGGCTG
CGTTCAAGGCGCAGTTCAACAGCGGTGTGATGCAGCCGCTGATGATGTTCGTGTCGAACCTGAACTATGTGCTGGTGGCG
GTCGTCGGCGGGCTGCGGGTCGCGTCCGGCGCGCTGTCCATCGGTGATGTGCAGGCCTTCATCCAGTACTCGCGCCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCCATGGCGAACCTGGTGCAGTCCGGCGTGGCCTCGGCCGAGCGGGTCTTCGAAC
TCCTGGACGCGGAGGAGCAGGAGGCGGACCCGGTGCCCGGCGAGCGGCCGGAACGGCTGCGCGGGCGCGTGGAGCTGGAG
CACGTGTCCTTCCGGTACGACCCGGACAAGCCGCTGATCGAGGACCTCTCGCTCACGGTGGAGCCCGGGCACACGGTGGC
CATCGTGGGCCCCACGGGCGCGGGCAAGACCACGCTGGTCAACCTGCTCATGCGGTTCTACGACGTCTCCGGCGGGCGGA
TCACCCTGGACGGGGTGGACGTGCGCCGGATGACCCGGGACGAGCTGCGGTCCGGGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGCACCATCGCGGAGAACATCGCGTACGGCGCCTCCCGCGAGGTGACCCAGGGCGAGATCGAGGAGGC
CGCGCGGGCGGCGCACGCCGACCGGTTCATCCGGACGCTGCCCGAGGGGTACGACACCGTGATCGACGACGAGGGCACGG
GGGTGAGCGCCGGTGAGAAGCAGCTCATCACCATCGCGCGCGCGTTCCTGTCCGACCCGGTGATCCTGGTCCTGGACGAG
GCGACGAGCTCCGTGGACACCCGCACCGAGGTGCTGATCCAGAAGGCGATGGCCAAACTGGCCGCCGGGCGCACCTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACACGATCCTCGTCATGGAGAACGGCTCCATCGTCGAACAGG
GCGCGCACGCCGACCTGCTGGCGGCGGACGGGGCGTACGCCCGGCTGTACCAGGCGCAGTTCGCGCAGGCGGTGGCCGAG
GTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(40-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

41.262

96.262

0.397