Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPX86_RS00180 Genome accession   NZ_CP046793
Coordinates   33666..35909 (+) Length   747 a.a.
NCBI ID   WP_158143711.1    Uniprot ID   -
Organism   Vibrio metschnikovii strain 9502-00     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 28666..40909
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPX86_RS00155 - 29069..29638 (-) 570 WP_040904201.1 PilZ domain-containing protein -
  GPX86_RS00160 lolC 29857..31065 (+) 1209 WP_199244788.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  GPX86_RS00165 lolD 31058..31744 (+) 687 WP_154167560.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPX86_RS00170 lolE 31744..32988 (+) 1245 WP_158143710.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPX86_RS00175 - 33136..33657 (-) 522 WP_110166641.1 DUF2062 domain-containing protein -
  GPX86_RS00180 comEC 33666..35909 (+) 2244 WP_158143711.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPX86_RS00185 msbA 35942..37690 (+) 1749 WP_154167664.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPX86_RS00190 lpxK 37694..38701 (+) 1008 WP_158143712.1 tetraacyldisaccharide 4'-kinase -
  GPX86_RS00195 - 38682..38861 (+) 180 WP_154167670.1 Trm112 family protein -
  GPX86_RS00200 kdsB 38861..39607 (+) 747 WP_158143713.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 747 a.a.        Molecular weight: 83920.94 Da        Isoelectric Point: 9.1697

>NTDB_id=407848 GPX86_RS00180 WP_158143711.1 33666..35909(+) (comEC) [Vibrio metschnikovii strain 9502-00]
MALLSNYWTLASFSLTILSAPFWPWMPKWPIIIGVIVVLMMSLVTRRGRGCIGIALALVLIITHGNKVTAQSNNILQFAT
DITIKGVADSFFTANRYGFSGSFVVRSINGQSLPRFLSPTVRLNSPIALQLGDHAQFVVQAKPIYGRLNEVGFDQEAFFL
SQGWSAQATVRPNTAYQIIPSSSLRAIFFQQIEQRTRSSEVQGFILALTFGERSGITEQQWLELRNSGLIHLTAISGLHI
GMAFGFGYLLGGMCSRLLRKGLWLPFVCGGLFALGYAWLAGFTLPTQRALMMCWLNILLVMFNVRVTAIQRVLLTLAAVL
ALDPFASLSTSFWLSFLAVSFVIYQVSVIDSRWTLWKKVFAGHLLLVMLMAPVTAYFFSGVSLYSALYNLVFIPWFSFVV
VPLLFIVLCGNVLIADQVQWLWTWVEAALMPFSWSLGFAEHSWLPINQTWQYSLLALFLVMMLRPLLTARSLIAIGLLFS
ATWLTIQPKVYWQVDMLDVGHGLAMVIERNGRYVLYDTGSSWHEGSVATSLIIPLLTRRGGLDALDGVIISHSDNDHAGG
LADIQSRLKPAWIRASYRNEHFSPCIQGEFWQWQELTFEVVWPPRLVDRADNPHSCVVRMVDNQYGHSVLLTGDVTAIGE
WLLSRDALLDSDVLVVPHHGSQTSSTQAFIEKVNPQLAIASLAKGHRWRLPHPDVLARYQSLDIPWLDTGEVGQITLRYQ
GSQRQLFTLRGGRITPWYRQMLRKEVE

Nucleotide


Download         Length: 2244 bp        

>NTDB_id=407848 GPX86_RS00180 WP_158143711.1 33666..35909(+) (comEC) [Vibrio metschnikovii strain 9502-00]
ATGGCTCTCTTATCGAATTACTGGACGTTGGCTTCGTTCTCGTTAACGATACTCTCTGCCCCATTTTGGCCTTGGATGCC
CAAATGGCCTATTATCATTGGCGTTATTGTTGTGTTGATGATGAGTCTCGTGACACGCCGAGGCAGGGGATGCATCGGAA
TTGCACTGGCCTTAGTGTTGATAATAACACACGGAAATAAAGTAACCGCACAGTCCAATAATATCTTACAATTTGCGACA
GATATTACCATAAAAGGTGTCGCTGACAGCTTTTTTACTGCAAATCGTTACGGTTTTAGTGGCTCTTTTGTGGTGAGATC
AATTAATGGTCAATCTTTACCCCGATTTCTGTCTCCCACGGTACGTTTAAATTCCCCGATCGCCTTACAATTGGGTGATC
ATGCTCAATTTGTGGTACAGGCGAAGCCGATTTATGGGCGATTGAATGAAGTCGGGTTTGATCAAGAAGCCTTTTTTCTG
AGTCAAGGCTGGAGCGCACAAGCGACCGTTCGTCCCAATACAGCTTATCAAATCATCCCCAGTTCAAGTTTGCGGGCGAT
ATTTTTTCAACAGATTGAGCAACGAACGCGATCCAGCGAGGTTCAAGGCTTTATTTTAGCCCTCACTTTTGGTGAGCGTA
GCGGGATTACTGAACAGCAGTGGTTGGAATTACGTAATAGCGGTTTAATCCATCTCACTGCGATCTCGGGATTACACATC
GGTATGGCATTTGGTTTTGGCTATTTGTTGGGGGGGATGTGTAGCCGCCTTTTGAGAAAGGGCTTATGGCTACCTTTTGT
TTGCGGTGGATTGTTTGCACTTGGTTATGCTTGGCTGGCAGGTTTTACGCTACCGACTCAGCGAGCATTGATGATGTGTT
GGTTAAATATTCTATTAGTAATGTTTAATGTTCGAGTGACCGCTATTCAACGGGTATTATTAACGTTAGCTGCGGTATTG
GCTTTGGACCCTTTTGCTTCATTAAGCACAAGTTTCTGGTTATCTTTTTTAGCGGTCAGTTTTGTTATTTACCAAGTCTC
CGTCATCGATAGCCGATGGACGCTATGGAAGAAAGTGTTTGCTGGTCATCTATTATTAGTGATGTTAATGGCTCCGGTGA
CGGCTTACTTCTTCTCTGGCGTTAGCCTTTATTCCGCGCTTTATAATCTCGTGTTTATTCCTTGGTTCAGCTTTGTGGTT
GTTCCCTTACTGTTTATTGTCTTGTGTGGCAATGTGTTGATCGCCGATCAAGTCCAGTGGCTTTGGACTTGGGTTGAGGC
GGCTTTAATGCCGTTTAGCTGGTCGTTAGGCTTTGCAGAACATAGCTGGTTACCGATTAACCAAACGTGGCAATATAGTT
TGTTGGCTTTATTTTTAGTGATGATGTTACGGCCACTTTTGACCGCGCGATCTCTTATTGCGATTGGGTTACTTTTTAGC
GCGACTTGGTTAACGATACAACCGAAGGTCTACTGGCAAGTGGATATGTTGGATGTTGGACATGGCTTGGCGATGGTTAT
TGAGCGTAACGGACGTTATGTTTTATACGATACAGGGAGTAGTTGGCATGAAGGCAGCGTGGCGACATCACTGATTATTC
CATTATTAACTCGACGCGGAGGACTAGATGCCCTTGATGGCGTGATCATTAGCCATAGTGATAATGATCACGCGGGAGGA
TTAGCCGATATTCAATCACGGCTAAAACCAGCTTGGATTCGCGCTAGTTACCGTAATGAACATTTCTCTCCGTGTATTCA
AGGTGAATTCTGGCAATGGCAAGAATTGACTTTTGAAGTCGTGTGGCCACCTCGTTTGGTTGATAGAGCGGATAACCCTC
ATTCTTGTGTGGTGCGTATGGTTGATAATCAATATGGGCATAGTGTGTTGTTGACCGGTGATGTGACGGCGATTGGAGAG
TGGTTACTCAGTCGTGACGCGTTATTAGACAGTGATGTGTTAGTGGTTCCTCATCATGGAAGTCAAACGTCTTCTACACA
AGCGTTTATAGAAAAGGTCAATCCACAGTTGGCGATTGCTTCATTGGCGAAAGGTCATCGATGGCGATTACCTCACCCAG
ACGTTCTCGCACGTTATCAATCTTTAGACATTCCGTGGCTTGATACGGGAGAGGTCGGACAAATAACACTCCGTTACCAA
GGATCTCAACGTCAGCTTTTCACCTTACGCGGTGGGCGAATCACGCCTTGGTATAGGCAGATGCTACGTAAAGAGGTAGA
ATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(208-463)

Domain of unknown function (DUF4131) (DUF4131)

(25-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(499-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

51.872

100

0.519
  comEC Vibrio parahaemolyticus RIMD 2210633

41.192

100

0.416
  comEC Vibrio campbellii strain DS40M4

41.036

100

0.414

Multiple sequence alignment