Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPY30_RS15240 Genome accession   NZ_CP046791
Coordinates   3086393..3087025 (+) Length   210 a.a.
NCBI ID   WP_011079297.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 2462-79     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3081393..3092025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS15220 - 3083263..3083745 (+) 483 WP_039436830.1 TIGR02444 family protein -
  GPY30_RS15225 - 3083917..3084894 (+) 978 WP_158134643.1 hydrolase -
  GPY30_RS15230 - 3084938..3085150 (+) 213 WP_039431176.1 YheU family protein -
  GPY30_RS15235 - 3085281..3086150 (+) 870 WP_039436832.1 phosphoribulokinase -
  GPY30_RS15240 crp 3086393..3087025 (+) 633 WP_011079297.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPY30_RS15245 - 3087098..3087889 (-) 792 WP_039431181.1 DUF1338 domain-containing protein -
  GPY30_RS15250 astD 3088070..3089527 (-) 1458 WP_039439264.1 succinylglutamate-semialdehyde dehydrogenase -
  GPY30_RS15255 astA 3089545..3090564 (-) 1020 WP_039431185.1 arginine N-succinyltransferase -
  GPY30_RS15260 - 3090664..3091875 (-) 1212 WP_039439262.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23538.33 Da        Isoelectric Point: 7.8387

>NTDB_id=407843 GPY30_RS15240 WP_011079297.1 3086393..3087025(+) (crp) [Vibrio navarrensis strain 2462-79]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMASRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=407843 GPY30_RS15240 WP_011079297.1 3086393..3087025(+) (crp) [Vibrio navarrensis strain 2462-79]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGCACGCTGATCCACGCGGGCGAAAAAGCAGAAACTTTGTACTACATCGTAAAAGGTTCTGTTGCCGTGCTTATCAAAG
ACGAAGAAGGTAAAGAAATGATTCTTTCTTACCTGAACCAAGGTGACTTTATCGGTGAGCTAGGCTTGTTTGAAGAAGGC
CAAGAGCGTACTGCTTGGGTTCGTGCAAAATCTCCTTGTGAAGTGGCTGAAATTTCATTCAAGAAATTCCGTCAGTTAAT
CCAAGTCAACCCAGACATTCTCATGCGCTTGTCAGCGCAGATGGCAAGTCGCCTACAAGTGACCAGCCAGAAAGTCGGCG
ACTTGGCGTTCTTGGACGTGACTGGTCGTATCGCTCAGACACTGCTGAATCTAGCAAAACAGCCAGATGCGATGACGCAC
CCAGATGGCATGCAGATCAAGATCACTCGTCAAGAGATTGGTCAGATTGTTGGTTGTTCACGTGAAACCGTTGGCCGCAT
TCTGAAAATGCTGGAAGAGCAGAACCTGATCTCTGCGCACGGCAAAACCATTGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment