Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   GPY30_RS01950 Genome accession   NZ_CP046791
Coordinates   434282..434869 (+) Length   195 a.a.
NCBI ID   WP_039436572.1    Uniprot ID   -
Organism   Vibrio navarrensis strain 2462-79     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 429282..439869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS01935 oxyR 429652..430545 (+) 894 WP_039423002.1 DNA-binding transcriptional regulator OxyR -
  GPY30_RS01940 - 430624..433140 (-) 2517 WP_158133018.1 PBP1A family penicillin-binding protein -
  GPY30_RS01945 pilM 433279..434298 (+) 1020 WP_039423006.1 type IV pilus assembly protein PilM Machinery gene
  GPY30_RS01950 pilN 434282..434869 (+) 588 WP_039436572.1 PilN domain-containing protein Machinery gene
  GPY30_RS01955 pilO 434862..435451 (+) 590 Protein_370 type 4a pilus biogenesis protein PilO -
  GPY30_RS01960 pilP 435441..435953 (+) 513 WP_039438951.1 pilus assembly protein PilP Machinery gene
  GPY30_RS01965 - 435984..437758 (+) 1775 Protein_372 type IV pilus secretin PilQ family protein -
  GPY30_RS01970 aroK 437968..438486 (+) 519 WP_039423021.1 shikimate kinase AroK -
  GPY30_RS01975 aroB 438519..439609 (+) 1091 Protein_374 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22477.90 Da        Isoelectric Point: 7.5642

>NTDB_id=407815 GPY30_RS01950 WP_039436572.1 434282..434869(+) (pilN) [Vibrio navarrensis strain 2462-79]
MKHTINLLPWREYQREEHRRRFVGVLILGVLIAVAIQWGIGQYVSYQQRLQQDRLNYLNHYIAQLDQRIQAMKIAKEEHG
QILARLKVVESLQAQRNNTTELMNLMPNVIPEGVYVDKIKMSDQEVEMAGISDSTARLATMLDNLERSEAIYDVEMHSIV
HGKERFGKAFQTFTVSFMFGVKPQPVPALTEANHG

Nucleotide


Download         Length: 588 bp        

>NTDB_id=407815 GPY30_RS01950 WP_039436572.1 434282..434869(+) (pilN) [Vibrio navarrensis strain 2462-79]
ATGAAGCACACCATTAACCTTCTGCCGTGGCGCGAATATCAGCGAGAGGAGCATCGACGCCGTTTTGTTGGGGTGCTGAT
TTTAGGCGTGCTGATCGCCGTGGCGATTCAGTGGGGGATTGGCCAATACGTCAGTTATCAGCAGCGCTTGCAGCAAGATC
GCCTCAACTACCTAAACCACTACATCGCCCAGTTGGATCAGCGTATCCAAGCGATGAAGATCGCTAAAGAAGAACACGGA
CAGATCTTAGCGCGTCTGAAGGTGGTGGAATCACTGCAAGCGCAGCGTAATAACACCACTGAGTTGATGAACCTGATGCC
CAATGTCATCCCTGAAGGGGTTTACGTCGACAAGATCAAAATGAGCGACCAGGAAGTGGAAATGGCTGGCATTAGTGACA
GCACGGCGCGCCTTGCCACCATGTTGGACAATCTTGAGCGCTCGGAGGCGATTTACGACGTTGAGATGCACTCCATCGTG
CATGGCAAAGAGCGATTTGGCAAAGCGTTTCAGACCTTCACTGTCTCTTTTATGTTTGGCGTGAAACCACAACCCGTGCC
AGCACTGACGGAGGCAAATCATGGTTGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(102-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

70.391

91.795

0.646
  pilN Vibrio cholerae strain A1552

57.949

100

0.579

Multiple sequence alignment