Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   GPY30_RS01945 Genome accession   NZ_CP046791
Coordinates   433279..434298 (+) Length   339 a.a.
NCBI ID   WP_039423006.1    Uniprot ID   A0A099LSE7
Organism   Vibrio navarrensis strain 2462-79     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428279..439298
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS01930 - 429225..429482 (-) 258 WP_158133017.1 DUF3624 domain-containing protein -
  GPY30_RS01935 oxyR 429652..430545 (+) 894 WP_039423002.1 DNA-binding transcriptional regulator OxyR -
  GPY30_RS01940 - 430624..433140 (-) 2517 WP_158133018.1 PBP1A family penicillin-binding protein -
  GPY30_RS01945 pilM 433279..434298 (+) 1020 WP_039423006.1 type IV pilus assembly protein PilM Machinery gene
  GPY30_RS01950 pilN 434282..434869 (+) 588 WP_039436572.1 PilN domain-containing protein Machinery gene
  GPY30_RS01955 pilO 434862..435451 (+) 590 Protein_370 type 4a pilus biogenesis protein PilO -
  GPY30_RS01960 pilP 435441..435953 (+) 513 WP_039438951.1 pilus assembly protein PilP Machinery gene
  GPY30_RS01965 - 435984..437758 (+) 1775 Protein_372 type IV pilus secretin PilQ family protein -
  GPY30_RS01970 aroK 437968..438486 (+) 519 WP_039423021.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 339 a.a.        Molecular weight: 38171.94 Da        Isoelectric Point: 7.3958

>NTDB_id=407814 GPY30_RS01945 WP_039423006.1 433279..434298(+) (pilM) [Vibrio navarrensis strain 2462-79]
MGKPLVTGIDIGHRSLKAVILKPAGNSYALLGYKEIVFERAIVAENHTLNHQEIVNTLKVLNKELPRFRRQVALAVPDSA
VISKQLQIEPIEDEKECEIAILQAFSHQSPFPVDELNIDYVRLHEPAQSKSASQSVQIFATKKEVVESRVRAAQAVRLKP
VLVDMHAHCLFNLRDLAAQRYPDKSAFCLLDVGAQTTSLIIHQREKTHFIKEFAYGVEHLNAAIGDEFSAHDAQEKTERF
IVEMVDRVARQLQLFQSINSQDKPQGLWLCGEGAATPLLLEALSRRLSLECELLNPLGLFEMKVARKKRRSVDWHHFSVA
AGLAIGGIQWLENKHEAHH

Nucleotide


Download         Length: 1020 bp        

>NTDB_id=407814 GPY30_RS01945 WP_039423006.1 433279..434298(+) (pilM) [Vibrio navarrensis strain 2462-79]
ATGGGTAAACCCTTAGTTACCGGGATTGATATTGGTCATCGTAGCCTCAAGGCTGTCATTCTGAAACCCGCAGGAAATAG
CTATGCCTTGCTGGGATATAAAGAAATTGTATTTGAGCGCGCTATTGTCGCCGAAAACCACACTCTGAATCATCAGGAAA
TTGTCAATACGCTTAAAGTCCTGAATAAAGAGTTGCCGCGTTTCCGTCGTCAGGTGGCGCTGGCCGTGCCGGATAGTGCC
GTGATCAGCAAGCAATTGCAAATTGAACCGATAGAAGATGAGAAAGAGTGTGAAATCGCCATTTTGCAGGCTTTTTCCCA
TCAATCGCCGTTTCCGGTCGATGAGCTGAATATTGATTATGTGCGTTTGCATGAACCCGCGCAGAGCAAAAGCGCCAGTC
AGAGCGTGCAGATCTTTGCCACTAAGAAAGAGGTGGTCGAGAGCCGGGTGCGCGCCGCGCAGGCGGTGAGGTTGAAACCT
GTGTTGGTGGACATGCACGCCCACTGCTTGTTTAACCTGCGAGATCTGGCGGCGCAGCGCTACCCAGACAAAAGTGCTTT
TTGCCTGTTGGATGTGGGCGCGCAAACCACCTCACTGATAATTCATCAGCGCGAGAAAACGCACTTTATCAAAGAGTTCG
CGTATGGAGTGGAGCACTTGAACGCCGCGATTGGCGATGAGTTCAGTGCCCATGATGCGCAGGAGAAGACCGAGCGCTTT
ATTGTGGAGATGGTGGATCGCGTCGCGCGACAGTTGCAGCTCTTTCAGTCCATCAATAGTCAAGACAAGCCACAAGGACT
TTGGTTGTGTGGCGAGGGAGCGGCGACGCCCCTGTTACTCGAGGCGCTCTCTCGTCGTTTGTCGTTGGAGTGCGAACTGC
TCAATCCGCTCGGTCTGTTTGAGATGAAAGTGGCACGTAAAAAACGTCGCAGTGTTGACTGGCACCACTTTTCGGTCGCC
GCTGGGTTAGCCATCGGTGGGATTCAATGGTTGGAGAACAAACATGAAGCACACCATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-325)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A099LSE7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

54.867

100

0.549
  pilM Vibrio cholerae strain A1552

47.536

100

0.484

Multiple sequence alignment