Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   GPY30_RS01960 Genome accession   NZ_CP046791
Coordinates   435441..435953 (+) Length   170 a.a.
NCBI ID   WP_039438951.1    Uniprot ID   A0A151KZI7
Organism   Vibrio navarrensis strain 2462-79     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 430441..440953
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY30_RS01940 - 430624..433140 (-) 2517 WP_158133018.1 PBP1A family penicillin-binding protein -
  GPY30_RS01945 pilM 433279..434298 (+) 1020 WP_039423006.1 type IV pilus assembly protein PilM Machinery gene
  GPY30_RS01950 pilN 434282..434869 (+) 588 WP_039436572.1 PilN domain-containing protein Machinery gene
  GPY30_RS01955 pilO 434862..435451 (+) 590 Protein_370 type 4a pilus biogenesis protein PilO -
  GPY30_RS01960 pilP 435441..435953 (+) 513 WP_039438951.1 pilus assembly protein PilP Machinery gene
  GPY30_RS01965 - 435984..437758 (+) 1775 Protein_372 type IV pilus secretin PilQ family protein -
  GPY30_RS01970 aroK 437968..438486 (+) 519 WP_039423021.1 shikimate kinase AroK -
  GPY30_RS01975 aroB 438519..439609 (+) 1091 Protein_374 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18937.91 Da        Isoelectric Point: 9.9068

>NTDB_id=407816 GPY30_RS01960 WP_039438951.1 435441..435953(+) (pilP) [Vibrio navarrensis strain 2462-79]
MKSSWWMFSVVLLLAGCRANSDSLDDFLRQVESQARQEVAKLKPEQEYVATSYASAALRLPFELPKEAVIATQPVVKKEC
WQPAERARSGRLERYPLSQLRLKGIMGSGNSVSGLVQTPQGTVERVLAGQYIGQNNGKVTLITPSYLMINETLPDGLGCW
QQRKVKLALR

Nucleotide


Download         Length: 513 bp        

>NTDB_id=407816 GPY30_RS01960 WP_039438951.1 435441..435953(+) (pilP) [Vibrio navarrensis strain 2462-79]
ATGAAAAGTAGCTGGTGGATGTTCTCGGTTGTATTGCTGTTGGCAGGCTGTCGCGCCAACAGTGACTCTTTGGATGACTT
TCTGCGTCAGGTGGAATCACAGGCTCGCCAAGAGGTCGCCAAGCTCAAACCAGAGCAGGAGTATGTCGCGACATCGTACG
CCTCGGCGGCGCTGCGTTTGCCCTTTGAACTGCCCAAAGAAGCGGTGATAGCCACTCAGCCAGTGGTGAAAAAAGAGTGC
TGGCAACCTGCTGAGCGCGCCCGCTCCGGCCGTTTAGAACGCTATCCGCTCAGCCAACTGCGTTTAAAAGGCATCATGGG
CAGCGGTAACTCCGTTTCCGGCTTAGTGCAAACCCCGCAAGGAACGGTCGAGCGGGTACTCGCGGGGCAATACATTGGGC
AGAACAACGGCAAAGTGACGCTGATTACCCCCTCGTATTTAATGATCAATGAAACCTTACCCGATGGGCTAGGTTGTTGG
CAGCAGCGTAAAGTCAAGCTGGCATTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(24-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A151KZI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

66.467

98.235

0.653
  pilP Vibrio cholerae strain A1552

60.606

97.059

0.588

Multiple sequence alignment