Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY29_RS16560 Genome accession   NZ_CP046787
Coordinates   3300481..3301125 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain 2013V-1174     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3295481..3306125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY29_RS16545 - 3295965..3297410 (-) 1446 WP_025611168.1 MSHA biogenesis protein MshI -
  GPY29_RS16550 csrD 3297422..3299431 (-) 2010 WP_025501567.1 RNase E specificity factor CsrD -
  GPY29_RS16555 ssb 3299672..3300202 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  GPY29_RS16560 qstR 3300481..3301125 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY29_RS16565 galU 3301383..3302255 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY29_RS16570 uvrA 3302393..3305215 (+) 2823 WP_029837281.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=407795 GPY29_RS16560 WP_005480993.1 3300481..3301125(+) (qstR) [Vibrio parahaemolyticus strain 2013V-1174]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=407795 GPY29_RS16560 WP_005480993.1 3300481..3301125(+) (qstR) [Vibrio parahaemolyticus strain 2013V-1174]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGCCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTATTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCAGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523

Multiple sequence alignment