Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPY46_RS23290 Genome accession   NZ_CP046776
Coordinates   2921944..2922588 (+) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain AM43962     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2916944..2927588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY46_RS23275 - 2917428..2918873 (-) 1446 WP_005481017.1 MSHA biogenesis protein MshI -
  GPY46_RS23280 csrD 2918885..2920894 (-) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  GPY46_RS23285 ssb 2921135..2921665 (-) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  GPY46_RS23290 qstR 2921944..2922588 (+) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPY46_RS23295 galU 2922846..2923718 (+) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPY46_RS23300 uvrA 2923856..2926678 (+) 2823 WP_025522377.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=407527 GPY46_RS23290 WP_005480993.1 2921944..2922588(+) (qstR) [Vibrio parahaemolyticus strain AM43962]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=407527 GPY46_RS23290 WP_005480993.1 2921944..2922588(+) (qstR) [Vibrio parahaemolyticus strain AM43962]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAGCGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTACTATCGAAATGTGATAAATACTCACACCGCGCCAGCAACCGTCGATCTCACCATTCGTGAACTGCAA
GTGCTGCGTTGTCTGCAAGCAGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTCAAAAAGCTCTCGGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523

Multiple sequence alignment