Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPY59_RS23715 Genome accession   NZ_CP046772
Coordinates   3182351..3182983 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio alginolyticus strain 2014V-1011     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3177351..3187983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY59_RS23690 - 3177370..3179289 (+) 1920 WP_158174196.1 ABC transporter ATP-binding protein -
  GPY59_RS23695 - 3179286..3179774 (+) 489 WP_017633738.1 TIGR02444 family protein -
  GPY59_RS23700 - 3179862..3180869 (+) 1008 WP_017633737.1 hydrolase -
  GPY59_RS23705 - 3180903..3181115 (+) 213 WP_005382815.1 YheU family protein -
  GPY59_RS23710 - 3181241..3182110 (+) 870 WP_005381434.1 phosphoribulokinase -
  GPY59_RS23715 crp 3182351..3182983 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPY59_RS23720 - 3183120..3183911 (-) 792 WP_005381426.1 DUF1338 domain-containing protein -
  GPY59_RS23725 astD 3184160..3185617 (-) 1458 WP_132937306.1 succinylglutamate-semialdehyde dehydrogenase -
  GPY59_RS23730 astA 3185646..3186665 (-) 1020 WP_005381422.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=407488 GPY59_RS23715 WP_005381432.1 3182351..3182983(+) (crp) [Vibrio alginolyticus strain 2014V-1011]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=407488 GPY59_RS23715 WP_005381432.1 3182351..3182983(+) (crp) [Vibrio alginolyticus strain 2014V-1011]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
GAGCACGCTAATTCACGCGGGCGAAAAGGCAGAAACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAGATGATCCTTTCTTACCTAAACCAAGGAGACTTTATTGGTGAACTTGGTCTATTCGAGGAAGAC
CAAGAGCGCACAGCTTGGGTTCGTGCTAAATCTCCTTGTGAAGTTGCTGAAATTTCTTTCAAGAAGTTCCGTCAGCTTAT
CCAAGTAAACCCAGACATCCTAATGCGTCTTTCTGCGCAGATGGCTCGTCGTCTTCAAGTAACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACGCTTCTGAACCTTGCAAAACAACCAGACGCAATGACTCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATTGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
TTTGAAGATGCTAGAAGAGCAGAACCTAATCTCTGCTCACGGTAAAACCATCGTGGTTTACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471

Multiple sequence alignment