Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HZT24_RS17425 Genome accession   NZ_CP058879
Coordinates   3613918..3614523 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain STLEFF_29     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3608918..3619523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT24_RS17405 (HZT24_17285) aes 3609059..3610018 (+) 960 WP_000801816.1 acetyl esterase -
  HZT24_RS17410 (HZT24_17290) hemH 3610015..3610977 (-) 963 WP_001250114.1 ferrochelatase -
  HZT24_RS17415 (HZT24_17295) adk 3611109..3611753 (-) 645 WP_001313630.1 adenylate kinase -
  HZT24_RS17420 (HZT24_17300) htpG 3611934..3613808 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HZT24_RS17425 (HZT24_17305) recR 3613918..3614523 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HZT24_RS17430 (HZT24_17310) ybaB 3614523..3614852 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HZT24_RS17435 (HZT24_17315) dnaX 3614905..3616836 (-) 1932 WP_000122008.1 DNA polymerase III subunit gamma/tau -
  HZT24_RS17440 (HZT24_17320) apt 3616965..3617516 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HZT24_RS17445 (HZT24_17325) ybaN 3617669..3618046 (-) 378 WP_001188905.1 DUF454 family protein -
  HZT24_RS17450 (HZT24_17330) priC 3618116..3618643 (+) 528 WP_000844848.1 primosomal replication protein N'' -
  HZT24_RS17455 (HZT24_17335) rsmS 3618657..3618818 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HZT24_RS25605 - 3618871..3618969 (-) 99 Protein_3432 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=407485 HZT24_RS17425 WP_001195025.1 3613918..3614523(-) (recR) [Escherichia coli strain STLEFF_29]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=407485 HZT24_RS17425 WP_001195025.1 3613918..3614523(-) (recR) [Escherichia coli strain STLEFF_29]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCACCTGTCGCCGCTGGACGGCATCGGTCCGGATGACATCGGCCTTGATCGCCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGTGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment