Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GPY10_RS11310 Genome accession   NZ_CP046767
Coordinates   2420794..2421426 (-) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio fluvialis strain 2013V-1300     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2415794..2426426
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY10_RS11290 - 2415875..2417086 (+) 1212 WP_158151669.1 aspartate aminotransferase family protein -
  GPY10_RS11295 astA 2417185..2418203 (+) 1019 Protein_2165 arginine N-succinyltransferase -
  GPY10_RS11300 astD 2418237..2419694 (+) 1458 WP_158147083.1 succinylglutamate-semialdehyde dehydrogenase -
  GPY10_RS11305 - 2419880..2420674 (+) 795 WP_158151670.1 DUF1338 domain-containing protein -
  GPY10_RS11310 crp 2420794..2421426 (-) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  GPY10_RS11315 - 2421668..2422537 (-) 870 WP_004728583.1 phosphoribulokinase -
  GPY10_RS11320 - 2422632..2422841 (-) 210 WP_020329461.1 YheU family protein -
  GPY10_RS11325 - 2422933..2423909 (-) 977 Protein_2171 hydrolase -
  GPY10_RS11330 - 2424022..2424495 (-) 474 WP_020329463.1 TIGR02444 family protein -
  GPY10_RS11335 - 2424492..2426413 (-) 1922 Protein_2173 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=407427 GPY10_RS11310 WP_004728582.1 2420794..2421426(-) (crp) [Vibrio fluvialis strain 2013V-1300]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=407427 GPY10_RS11310 WP_004728582.1 2420794..2421426(-) (crp) [Vibrio fluvialis strain 2013V-1300]
ATGGTTCTAGGTAAACCTCAAACCGACCCGACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTGAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTCGCGGAAATTTCATTCAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTAATGCGCCTGTCTGGCCAGATGGCTCGCCGTCTGCAAGTGACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGCATCGCGCAGACCCTACTGAACCTAGCGAAACAACCAGACGCCATGACCCAC
CCAGACGGTATGCAAATCAAGATCACTCGTCAGGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCACACGGTAAGACTATCGTGGTATACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment