Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HZT32_RS17410 Genome accession   NZ_CP058874
Coordinates   3563611..3564216 (-) Length   201 a.a.
NCBI ID   WP_240724397.1    Uniprot ID   -
Organism   Escherichia coli strain STLEFF_47     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3558611..3569216
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HZT32_RS17390 (HZT32_17230) aes 3558752..3559711 (+) 960 WP_000801797.1 acetyl esterase -
  HZT32_RS17395 (HZT32_17235) hemH 3559708..3560670 (-) 963 WP_001250105.1 ferrochelatase -
  HZT32_RS17400 (HZT32_17240) adk 3560802..3561446 (-) 645 WP_001220233.1 adenylate kinase -
  HZT32_RS17405 (HZT32_17245) htpG 3561627..3563501 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  HZT32_RS17410 (HZT32_17250) recR 3563611..3564216 (-) 606 WP_240724397.1 recombination mediator RecR Machinery gene
  HZT32_RS17415 (HZT32_17255) ybaB 3564216..3564545 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HZT32_RS17420 (HZT32_17260) dnaX 3564598..3566529 (-) 1932 WP_000122011.1 DNA polymerase III subunit gamma/tau -
  HZT32_RS17425 (HZT32_17265) apt 3566658..3567209 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HZT32_RS17430 (HZT32_17270) ybaN 3567362..3567739 (-) 378 WP_001188905.1 DUF454 family protein -
  HZT32_RS17435 (HZT32_17275) priC 3567809..3568336 (+) 528 WP_000844858.1 primosomal replication protein N'' -
  HZT32_RS17440 (HZT32_17280) rsmS 3568350..3568511 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HZT32_RS26130 - 3568564..3568662 (-) 99 Protein_3428 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 22002.04 Da        Isoelectric Point: 5.0751

>NTDB_id=407400 HZT32_RS17410 WP_240724397.1 3563611..3564216(-) (recR) [Escherichia coli strain STLEFF_47]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEHEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGISPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=407400 HZT32_RS17410 WP_240724397.1 3563611..3564216(-) (recR) [Escherichia coli strain STLEFF_47]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACACGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGCCGTTATTTTGT
GTTGATGGGACACCTGTCACCGCTGGACGGCATCAGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-172)

RecR protein (RecR_ZnF)

(41-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

44.724

99.005

0.443
  recR Bacillus subtilis subsp. subtilis str. 168

43.719

99.005

0.433

Multiple sequence alignment