Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   GPY10_RS04945 Genome accession   NZ_CP046767
Coordinates   1058523..1060760 (-) Length   745 a.a.
NCBI ID   WP_158151345.1    Uniprot ID   -
Organism   Vibrio fluvialis strain 2013V-1300     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1053523..1065760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPY10_RS04925 kdsB 1054828..1055571 (-) 744 WP_158151341.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  GPY10_RS04930 - 1055571..1055750 (-) 180 WP_020327784.1 Trm112 family protein -
  GPY10_RS04935 lpxK 1055731..1056738 (-) 1008 WP_158151343.1 tetraacyldisaccharide 4'-kinase -
  GPY10_RS04940 msbA 1056742..1058490 (-) 1749 WP_020327786.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  GPY10_RS04945 comEC 1058523..1060760 (-) 2238 WP_158151345.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GPY10_RS04950 - 1060769..1061299 (+) 531 WP_020327788.1 DUF2062 domain-containing protein -
  GPY10_RS04955 lolE 1061432..1062676 (-) 1245 WP_158124606.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  GPY10_RS04960 lolD 1062677..1063363 (-) 687 WP_158151347.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  GPY10_RS04965 lolC 1063356..1064563 (-) 1208 Protein_989 lipoprotein-releasing ABC transporter permease subunit LolC -
  GPY10_RS04970 - 1064739..1065308 (+) 570 WP_020327793.1 hypothetical protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83410.71 Da        Isoelectric Point: 8.3818

>NTDB_id=407400 GPY10_RS04945 WP_158151345.1 1058523..1060760(-) (comEC) [Vibrio fluvialis strain 2013V-1300]
MTLYSNYWMLASFSLTVLSAPLWPWMPEWDFAFICLAALMTTLVVSRFRVFGGIALALLVIVTHGNVVRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGYEGTVVVRSINGQELRTFWQPKVRLIAPVDLQIGDQFEFSVMVKPVYGRRNEAGFDLEAYYF
SQGWVARVNVKPQSKFEVVSTPNFRSMLHRQIKTWTQNSPSQGMILALTFGDRNGIHEAEWRSLRNSGLIHLVAISGLHI
GMAFAIGYLIGSAMMRLHVSLLWMPFVCGMCIAAIYAWLAGFTLPTQRALLMCGLNVALTMSGVRVTAVQRILITLATVL
IVTPFAPLSNSFWLSFLAVALVLYQLADRTTCHGWRKWLTVQCSLVTMMIPVSAYFFSGFSVSSALYNLIFIPYFSFVIV
PLLFLALFLTTFVGDITWLWRGIDLSFWPLQRALEWAGSSWIAVSQTATVVFSVGLLLWVCRPVLSWRAQLYAGIALLGF
GFFTPHDERWRVDILDVGHGLAVLIERNNNALLYDTGSGWPEGSYVRSLIVPILNQRGMDSLDGLILSHTDNDHAGGLKD
AETLLSPKWVVASQSGPNWQACHAGEQWEWQGLTMTALWPPQTVNRAYNLQSCVIRLSDPEYGHSLLLAGDVTAVGEWLL
SRQPMDIQSDVIIVPHHGSKTSSTRQFIERVSPQVAIASLAKGNQWQLPHRSVVARYVDAGSDWLDTGEAGQITLTYQAQ
SRQLSTLRHIGNPSWYRQMLRKGVE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=407400 GPY10_RS04945 WP_158151345.1 1058523..1060760(-) (comEC) [Vibrio fluvialis strain 2013V-1300]
ATGACTCTCTATTCGAATTACTGGATGCTCGCTTCGTTCTCGCTCACCGTATTGTCTGCGCCCCTTTGGCCGTGGATGCC
AGAGTGGGATTTTGCATTCATTTGCCTTGCTGCTCTGATGACCACGCTCGTGGTGAGCCGATTCAGAGTTTTTGGCGGGA
TCGCGCTTGCCTTGTTAGTGATAGTAACACACGGCAACGTTGTGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAAGTTGACAGCTTTTTTAAGCAAATTAGTTATGGTTATGAAGGGACTGTAGTAGTCAGATC
AATTAATGGACAAGAATTGCGCACTTTTTGGCAGCCGAAGGTACGATTAATTGCTCCGGTCGATCTGCAAATTGGCGATC
AGTTTGAGTTTTCTGTAATGGTTAAACCCGTTTATGGCCGCCGTAATGAGGCCGGTTTTGACTTAGAAGCTTACTACTTT
AGTCAGGGTTGGGTTGCTAGAGTGAACGTTAAACCTCAGTCAAAATTTGAGGTCGTTTCAACGCCGAATTTTCGCAGTAT
GTTGCACCGCCAAATCAAAACATGGACGCAAAACAGCCCTTCTCAAGGCATGATCTTGGCGCTGACATTTGGTGACCGCA
ACGGCATTCATGAAGCTGAATGGCGCTCACTGAGAAATAGCGGACTCATCCATCTGGTGGCGATATCCGGTTTGCATATT
GGCATGGCGTTCGCGATTGGTTATCTGATTGGAAGTGCGATGATGAGGCTGCATGTCAGTTTGCTGTGGATGCCTTTCGT
TTGCGGGATGTGTATTGCCGCGATTTATGCATGGCTGGCAGGATTTACCTTGCCGACCCAGCGCGCTTTGTTGATGTGCG
GTCTCAACGTCGCTCTCACGATGAGTGGCGTGCGTGTGACGGCGGTGCAGCGAATCCTTATCACCCTTGCTACGGTATTA
ATCGTGACGCCGTTTGCGCCGCTCTCCAACAGTTTCTGGCTCTCATTCTTGGCGGTCGCGTTGGTTTTGTATCAATTGGC
AGACCGAACAACATGTCATGGCTGGCGAAAATGGCTGACGGTGCAATGCTCGTTAGTCACTATGATGATTCCAGTTTCCG
CGTATTTTTTCTCCGGGTTCAGTGTTTCGTCGGCACTCTATAACCTGATTTTTATTCCTTACTTCAGCTTTGTCATCGTC
CCGCTGCTGTTTCTCGCACTGTTTCTCACTACCTTTGTCGGAGATATCACCTGGCTGTGGCGTGGGATTGACCTGAGCTT
CTGGCCACTGCAGCGGGCACTGGAATGGGCGGGATCGAGCTGGATTGCTGTAAGTCAGACGGCGACGGTCGTATTTAGTG
TTGGCCTTCTCCTTTGGGTTTGCCGCCCGGTATTAAGCTGGCGAGCTCAACTCTATGCGGGAATTGCATTACTTGGCTTT
GGCTTTTTTACCCCACACGATGAGCGTTGGCGAGTTGACATCCTTGATGTCGGGCACGGTCTGGCAGTGTTGATTGAACG
GAATAACAACGCCCTGTTGTACGACACCGGCAGTGGCTGGCCTGAAGGTAGTTACGTTCGCTCTTTGATTGTTCCAATAC
TCAATCAGCGCGGTATGGACTCTCTGGATGGTTTAATTCTCAGCCATACAGACAATGACCACGCTGGTGGTTTAAAAGAT
GCCGAAACCTTATTGTCCCCGAAATGGGTTGTGGCGAGTCAGTCTGGTCCAAATTGGCAGGCTTGCCACGCGGGAGAACA
GTGGGAATGGCAAGGACTGACGATGACGGCACTGTGGCCGCCGCAAACCGTCAATCGTGCTTATAATCTGCAGTCGTGCG
TGATTCGATTAAGCGATCCTGAATACGGTCATTCACTACTTCTGGCTGGCGATGTTACGGCAGTCGGTGAGTGGTTACTC
AGTCGGCAACCCATGGATATTCAGAGCGATGTCATCATTGTGCCTCATCACGGCAGTAAAACGTCCTCAACGCGTCAGTT
TATCGAGCGGGTTTCCCCGCAAGTGGCCATTGCGTCTCTGGCGAAAGGGAATCAATGGCAGTTGCCGCATCGCAGTGTGG
TGGCGCGTTATGTGGATGCGGGGTCCGACTGGCTTGATACTGGCGAGGCGGGGCAAATCACTCTGACTTATCAAGCTCAA
TCTCGGCAGCTATCGACTCTGCGCCACATAGGAAATCCTTCATGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(32-173)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-678)

Competence protein (Competence)

(208-461)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.467

100

0.538
  comEC Vibrio parahaemolyticus RIMD 2210633

42.364

100

0.428
  comEC Vibrio campbellii strain DS40M4

41.402

100

0.42

Multiple sequence alignment