Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   SSU1300283_RS03515 Genome accession   NZ_CP058741
Coordinates   723805..724488 (+) Length   227 a.a.
NCBI ID   WP_002936735.1    Uniprot ID   -
Organism   Streptococcus suis strain 13-00283-02     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 718805..729488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU1300283_RS03495 (SSU1300283_00706) - 718895..720406 (+) 1512 WP_014637089.1 ABC transporter permease/substrate-binding protein -
  SSU1300283_RS03500 (SSU1300283_00707) - 720418..721179 (+) 762 Protein_673 nuclear transport factor 2 family protein -
  SSU1300283_RS03505 (SSU1300283_00709) - 721327..722451 (+) 1125 WP_014637088.1 aminotransferase -
  SSU1300283_RS03510 (SSU1300283_00710) - 722466..723635 (-) 1170 WP_024381621.1 DUF2974 domain-containing protein -
  SSU1300283_RS03515 (SSU1300283_00711) braR 723805..724488 (+) 684 WP_002936735.1 response regulator transcription factor Regulator
  SSU1300283_RS03520 (SSU1300283_00712) - 724481..725473 (+) 993 WP_024391019.1 HAMP domain-containing sensor histidine kinase -
  SSU1300283_RS03525 (SSU1300283_00713) - 725571..726329 (+) 759 WP_044667442.1 ABC transporter ATP-binding protein -
  SSU1300283_RS03530 (SSU1300283_00714) - 726331..727836 (+) 1506 Protein_679 ABC transporter permease -
  SSU1300283_RS03535 (SSU1300283_00715) - 727920..729209 (+) 1290 WP_014636745.1 IS4-like element ISSsu2 family transposase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26523.77 Da        Isoelectric Point: 4.6132

>NTDB_id=407103 SSU1300283_RS03515 WP_002936735.1 723805..724488(+) (braR) [Streptococcus suis strain 13-00283-02]
MQKILLIEDDKTISQLVAKNLINWGYQVQEVKDFQMVLEQMEEFQPHLILLDIGLPFFNGYYWCQEIRKTSRVPIMFLSS
HDQPMDIVMAINMGADDYVTKPFEMTVLLAKIQGLLRRTYDFVGEQSLLWFEEISLDLKTMQVSYGQVVEELTRNEFQIL
RVLFEHGKEVVSREELMRELWNSDIFVDDNTLSVNIARLRKKLAELGLPDVIATKKGVGYGLVWTHE

Nucleotide


Download         Length: 684 bp        

>NTDB_id=407103 SSU1300283_RS03515 WP_002936735.1 723805..724488(+) (braR) [Streptococcus suis strain 13-00283-02]
ATGCAGAAAATTCTTCTTATCGAGGATGATAAAACGATTAGCCAACTAGTTGCTAAAAACTTGATAAACTGGGGTTACCA
GGTGCAAGAGGTCAAGGATTTTCAGATGGTTTTGGAACAGATGGAAGAGTTTCAGCCCCATTTGATTTTACTGGATATTG
GTCTGCCGTTTTTCAATGGCTATTACTGGTGTCAGGAAATTCGCAAGACATCCCGTGTGCCCATTATGTTTCTGTCTTCC
CATGACCAGCCAATGGATATTGTTATGGCGATCAATATGGGGGCGGATGACTATGTGACCAAGCCCTTTGAAATGACGGT
TCTCCTAGCCAAAATACAGGGGCTTCTCAGAAGAACCTATGACTTTGTCGGAGAACAAAGTTTACTCTGGTTTGAGGAGA
TTTCCCTAGACCTAAAGACCATGCAGGTGTCCTATGGACAGGTTGTGGAAGAGCTGACGCGAAATGAATTTCAGATTTTA
CGCGTTTTATTTGAACATGGCAAGGAAGTGGTCAGCCGTGAGGAGCTGATGAGAGAACTCTGGAACAGTGATATTTTTGT
GGATGACAATACTTTGTCGGTTAACATTGCTCGCCTGCGTAAGAAATTGGCAGAACTGGGTCTGCCAGATGTGATTGCGA
CCAAGAAAGGAGTAGGCTACGGCCTGGTGTGGACACATGAATAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-221)

Response regulator receiver domain (Response_reg)

(4-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

48.165

96.035

0.463
  vicR Streptococcus mutans UA159

39.13

100

0.396
  micA Streptococcus pneumoniae Cp1015

37.991

100

0.383

Multiple sequence alignment