Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   GPW70_RS17395 Genome accession   NZ_CP046740
Coordinates   2732634..2733278 (+) Length   214 a.a.
NCBI ID   WP_001188318.1    Uniprot ID   A0A085QXE6
Organism   Vibrio cholerae strain 3566-06     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2727634..2738278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS17380 - 2728218..2729657 (-) 1440 WP_001887864.1 PilN domain-containing protein -
  GPW70_RS17385 csrD 2729670..2731628 (-) 1959 WP_229767295.1 RNase E specificity factor CsrD -
  GPW70_RS17390 ssb 2731806..2732342 (-) 537 WP_001887866.1 single-stranded DNA-binding protein Machinery gene
  GPW70_RS17395 qstR 2732634..2733278 (+) 645 WP_001188318.1 LuxR C-terminal-related transcriptional regulator Regulator
  GPW70_RS17400 galU 2733451..2734323 (+) 873 WP_001920788.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  GPW70_RS17405 uvrA 2734479..2737301 (+) 2823 WP_000357693.1 excinuclease ABC subunit UvrA -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24722.55 Da        Isoelectric Point: 9.6461

>NTDB_id=406937 GPW70_RS17395 WP_001188318.1 2732634..2733278(+) (qstR) [Vibrio cholerae strain 3566-06]
MQRANYARTIYLLTTQPKTLHPGVQAAIEQLNLPVPVIEPERLLREYQSDKHKILLLDHAENGLIRQQLGPLKLTSPYFE
TILFNVEKRLRTEDLLTFGNLKGLFYANEDTGFIAHGLGEIINGQNWLPRHVSSQLLHYYRYAFQSHQVQATVDLTAREI
QILRCLQTGASNMQIAENLFISEFTVKSHLYQIFKKLNVKNRVKAIAWVNQNLL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=406937 GPW70_RS17395 WP_001188318.1 2732634..2733278(+) (qstR) [Vibrio cholerae strain 3566-06]
ATGCAACGAGCCAACTATGCACGCACGATTTATTTATTAACGACACAGCCGAAAACGTTACATCCCGGAGTTCAAGCCGC
CATTGAGCAATTGAACCTGCCCGTCCCGGTGATTGAACCAGAACGCTTATTGCGCGAGTATCAATCCGATAAACACAAAA
TATTGTTGCTCGACCATGCGGAAAATGGCCTGATTCGCCAGCAATTGGGTCCCCTCAAGCTTACCAGCCCGTACTTCGAA
ACCATTTTGTTTAATGTCGAGAAACGGTTAAGAACAGAAGATCTGCTCACTTTTGGCAACCTCAAAGGTCTGTTTTATGC
CAATGAAGACACAGGCTTTATTGCCCACGGTCTTGGGGAGATCATTAATGGCCAAAACTGGCTACCTCGCCATGTCAGCA
GTCAGTTGCTGCATTACTATCGTTACGCTTTCCAAAGCCATCAAGTTCAAGCCACTGTCGATTTGACTGCACGTGAAATT
CAGATCCTGCGCTGTTTACAAACTGGCGCATCAAATATGCAAATCGCTGAGAATTTATTTATTAGTGAGTTCACGGTGAA
ATCGCATCTTTATCAGATATTTAAAAAGCTAAACGTGAAAAATCGAGTCAAAGCGATCGCTTGGGTTAATCAAAATTTAC
TGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A085QXE6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio cholerae strain A1552

98.598

100

0.986
  qstR Vibrio campbellii strain DS40M4

52.336

100

0.523
  qstR Vibrio parahaemolyticus RIMD 2210633

51.628

100

0.519

Multiple sequence alignment