Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   HYO64_RS02055 Genome accession   NZ_CP058729
Coordinates   433316..433792 (+) Length   158 a.a.
NCBI ID   WP_031380019.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428316..438792
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS02045 - 428830..429612 (+) 783 WP_031963609.1 pilus assembly PilX family protein -
  HYO64_RS02050 - 429628..433302 (+) 3675 WP_114155194.1 PilC/PilY family type IV pilus protein -
  HYO64_RS02055 pilY2 433316..433792 (+) 477 WP_031380019.1 type IV pilin protein Machinery gene
  HYO64_RS02060 pilE 433786..434250 (+) 465 WP_114155196.1 type IV pilin protein Machinery gene
  HYO64_RS02065 rpsP 434398..434649 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HYO64_RS02070 rimM 434669..435217 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  HYO64_RS02075 trmD 435263..436003 (+) 741 WP_114155198.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HYO64_RS02080 rplS 436211..436579 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  HYO64_RS02085 - 436631..437572 (-) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  HYO64_RS02090 - 437687..438718 (-) 1032 WP_114155200.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17393.89 Da        Isoelectric Point: 9.7307

>NTDB_id=406917 HYO64_RS02055 WP_031380019.1 433316..433792(+) (pilY2) [Acinetobacter baumannii strain M164-3]
MKRKFTYSLGFTLIEVMVVVVIVAIFAAVAIPSYQAYVLRADASRAEQEIQKISIQLNRHKSRNFNYKGFSTGAAAPVIL
PVGATGDAVKYQITIRDGDDTSKPLTDPTALGQNWVIRAEASDPYNFTYLFSSNGLRCKNKATSNVTYITCGTGAERW

Nucleotide


Download         Length: 477 bp        

>NTDB_id=406917 HYO64_RS02055 WP_031380019.1 433316..433792(+) (pilY2) [Acinetobacter baumannii strain M164-3]
ATGAAACGTAAATTCACATATTCTTTGGGCTTCACTCTTATTGAGGTAATGGTTGTGGTGGTGATTGTTGCTATTTTTGC
GGCAGTTGCAATACCTTCATATCAAGCCTATGTTTTGCGTGCGGATGCTTCGCGCGCAGAACAGGAAATCCAGAAAATTT
CCATACAACTCAATCGTCATAAATCTAGAAATTTTAATTATAAAGGTTTTTCTACAGGTGCTGCTGCGCCAGTAATTTTG
CCTGTTGGAGCGACTGGTGATGCTGTTAAATATCAAATAACAATCCGAGATGGTGATGATACTTCGAAACCTTTAACAGA
TCCTACAGCTTTAGGGCAAAACTGGGTAATTCGAGCAGAGGCTTCCGATCCTTATAATTTTACTTATTTATTTAGTAGTA
ATGGATTACGTTGTAAAAATAAAGCCACTAGCAATGTTACTTATATAACTTGTGGCACTGGAGCTGAGCGGTGGTAA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(32-100)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-30)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

46.25

100

0.468
  comE Acinetobacter baylyi ADP1

42.424

100

0.443

Multiple sequence alignment