Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   GPW70_RS09875 Genome accession   NZ_CP046740
Coordinates   1058820..1059131 (+) Length   103 a.a.
NCBI ID   WP_001166105.1    Uniprot ID   Q9KQT1
Organism   Vibrio cholerae strain 3566-06     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1053820..1064131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPW70_RS09860 lon 1053857..1056217 (+) 2361 WP_001047611.1 endopeptidase La -
  GPW70_RS09865 - 1056401..1056673 (+) 273 WP_001044516.1 HU family DNA-binding protein -
  GPW70_RS09870 ppiD 1056826..1058685 (+) 1860 WP_019828102.1 peptidylprolyl isomerase -
  GPW70_RS09875 comEA 1058820..1059131 (+) 312 WP_001166105.1 ComEA family DNA-binding protein Machinery gene
  GPW70_RS09880 cmk 1059314..1059991 (+) 678 WP_000094752.1 (d)CMP kinase -
  GPW70_RS09885 rpsA 1060100..1061770 (+) 1671 WP_000140318.1 30S ribosomal protein S1 -
  GPW70_RS09890 ihfB 1062059..1062337 (+) 279 WP_000167341.1 integration host factor subunit beta -
  GPW70_RS09895 - 1062476..1062757 (+) 282 WP_000691492.1 LapA family protein -
  GPW70_RS09900 lapB 1062769..1063938 (+) 1170 WP_000889971.1 lipopolysaccharide assembly protein LapB -

Sequence

Protein


Download         Length: 103 a.a.        Molecular weight: 10966.78 Da        Isoelectric Point: 5.0506

>NTDB_id=406917 GPW70_RS09875 WP_001166105.1 1058820..1059131(+) (comEA) [Vibrio cholerae strain 3566-06]
MQIKTKIVTLFLSLCLPTLPLLANAEETAPAAQVEEGIVITVNINTASAEELATLLKGIGLKKAQAIVDYREANGPFTHI
DDLTNVKGIGEATVRNNAARILL

Nucleotide


Download         Length: 312 bp        

>NTDB_id=406917 GPW70_RS09875 WP_001166105.1 1058820..1059131(+) (comEA) [Vibrio cholerae strain 3566-06]
ATGCAAATCAAAACCAAAATAGTGACACTGTTTCTTTCTCTCTGCCTGCCGACATTACCGTTACTGGCCAATGCCGAGGA
AACGGCACCCGCTGCGCAGGTAGAAGAAGGTATTGTGATCACTGTCAACATTAATACCGCTTCTGCAGAAGAACTGGCGA
CGTTACTCAAAGGCATCGGGCTTAAGAAAGCTCAGGCCATTGTCGATTATCGAGAAGCCAACGGTCCTTTTACTCATATC
GATGATCTGACGAATGTGAAAGGGATTGGTGAAGCGACAGTGCGCAACAATGCCGCAAGGATCTTGTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(41-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KQT1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

100

100

1
  comEA Vibrio cholerae strain A1552

100

100

1
  comEA Vibrio parahaemolyticus RIMD 2210633

62.766

91.262

0.573
  comEA Vibrio campbellii strain DS40M4

58.333

93.204

0.544
  comE1/comEA Haemophilus influenzae Rd KW20

40.541

100

0.437

Multiple sequence alignment