Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   HYO64_RS02060 Genome accession   NZ_CP058729
Coordinates   433786..434250 (+) Length   154 a.a.
NCBI ID   WP_114155196.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain M164-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 428786..439250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HYO64_RS02045 - 428830..429612 (+) 783 WP_031963609.1 pilus assembly PilX family protein -
  HYO64_RS02050 - 429628..433302 (+) 3675 WP_114155194.1 PilC/PilY family type IV pilus protein -
  HYO64_RS02055 pilY2 433316..433792 (+) 477 WP_031380019.1 type IV pilin protein Machinery gene
  HYO64_RS02060 pilE 433786..434250 (+) 465 WP_114155196.1 type IV pilin protein Machinery gene
  HYO64_RS02065 rpsP 434398..434649 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  HYO64_RS02070 rimM 434669..435217 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  HYO64_RS02075 trmD 435263..436003 (+) 741 WP_114155198.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  HYO64_RS02080 rplS 436211..436579 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  HYO64_RS02085 - 436631..437572 (-) 942 WP_085943440.1 lipase family alpha/beta hydrolase -
  HYO64_RS02090 - 437687..438718 (-) 1032 WP_114155200.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16899.59 Da        Isoelectric Point: 9.6578

>NTDB_id=406918 HYO64_RS02060 WP_114155196.1 433786..434250(+) (pilE) [Acinetobacter baumannii strain M164-3]
MVNKIKGFTLIELMIAVAIIAVLAAIAYPSYLEHVRHTKRVEMQTTLQQIAMQIQRYKIANFKVVGATSSDFNIAASYPV
QGTPLYIVNLTPVTSGFLTAETWILTATPIANTPQSGDGHIVLNYRGERCWKKGTDINSGRACVPSVTSNWDGK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=406918 HYO64_RS02060 WP_114155196.1 433786..434250(+) (pilE) [Acinetobacter baumannii strain M164-3]
GTGGTAAATAAAATAAAAGGTTTTACCTTAATTGAGTTAATGATTGCTGTAGCAATTATTGCGGTTTTAGCAGCGATAGC
TTATCCCTCTTATCTGGAGCATGTCCGTCATACCAAACGTGTGGAAATGCAAACTACTTTGCAACAGATTGCTATGCAGA
TTCAGCGATACAAGATTGCAAACTTTAAAGTAGTTGGAGCAACAAGTTCAGATTTTAATATTGCAGCATCCTATCCAGTA
CAAGGTACGCCTCTTTATATAGTCAATCTGACCCCTGTTACATCAGGTTTTTTGACTGCTGAAACATGGATATTAACTGC
GACACCGATTGCAAATACTCCACAATCTGGAGATGGGCATATTGTCTTAAATTATCGTGGTGAACGGTGCTGGAAAAAAG
GGACCGATATTAACAGTGGTAGGGCTTGTGTTCCTTCTGTGACCTCGAATTGGGATGGCAAGTAA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

44.898

95.455

0.429
  comF Acinetobacter baylyi ADP1

43.919

96.104

0.422

Multiple sequence alignment