Detailed information NTG0406766

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GO998_RS03020
• Genome accession: NZ_CP046729
• Coordinates: 638887..639768 (-)
• Length: 293 a.a.
• NCBI ID: WP_283235487.1
• Uniprot ID: -
• Organism: Ralstonia syzygii strain LLRS-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 633887..644768

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO998_RS02990 (GO998_02990)	argJ	634596..635825 (+)	1230	WP_211904477.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
GO998_RS02995 (GO998_02995)	-	635841..636725 (+)	885	WP_013211399.1	ATP-binding protein	-
GO998_RS03000 (GO998_03000)	-	636703..637164 (+)	462	WP_211904478.1	NUDIX domain-containing protein	-
GO998_RS03005 (GO998_03005)	-	637157..637372 (-)	216	WP_013211401.1	DNA gyrase inhibitor YacG	-
GO998_RS03010 (GO998_03010)	zapD	637384..638142 (-)	759	WP_013211402.1	cell division protein ZapD	-
GO998_RS03015 (GO998_03015)	coaE	638260..638874 (-)	615	WP_211904479.1	dephospho-CoA kinase	-
GO998_RS03020 (GO998_03020)	pilD	638887..639768 (-)	882	WP_283235487.1	prepilin peptidase	Machinery gene
GO998_RS03025 (GO998_03025)	-	639771..641036 (-)	1266	WP_075463375.1	type II secretion system F family protein	-
GO998_RS03030 (GO998_03030)	pilF	641081..642808 (-)	1728	WP_211904481.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GO998_RS03035 (GO998_03035)	-	643056..644333 (-)	1278	WP_211904482.1	HlyC/CorC family transporter	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 31649.66 Da
• Isoelectric Point: 8.0336

>NTDB_id=406766 GO998_RS03020 WP_283235487.1 638887..639768(-) (pilD) [Ralstonia syzygii strain LLRS-1]
MSGMFVIPTLAQLPAWFVIGSAALLGLLVGSFLNVVIHRLPRMIEREEANYIAELRDEPLPHPEPYNLVIPRSACPSCGH
QIKAVENIPVISWLALRGRCSACKAPISWRYPAVELVTGVLTGACLWHFGPTWVAVASAALLWFLIAGSMIDADTQLLPD
AITQPLLWLGLLVNLFDMFARLPDAVIGAMAGYLFLWTIYWAYKLLRGREGMGYGDFKLMAALGAWFGWQALPLLVLLSS
VVGLVFGAVRIARGAKSESPFSFGPFIAGAGVIALLAGPQLVALTGLAPLLAR

Nucleotide

• Length: 882 bp

>NTDB_id=406766 GO998_RS03020 WP_283235487.1 638887..639768(-) (pilD) [Ralstonia syzygii strain LLRS-1]
ATGTCCGGGATGTTTGTCATTCCCACGCTGGCGCAGTTGCCGGCGTGGTTCGTGATCGGCTCGGCGGCGCTGCTGGGCCT
GCTGGTCGGCAGCTTCCTCAACGTGGTGATCCACCGCCTGCCGCGCATGATCGAGCGCGAAGAGGCCAACTACATCGCCG
AGCTGCGCGACGAACCGCTGCCGCATCCCGAGCCGTACAACCTGGTCATACCGCGCTCGGCCTGCCCGTCGTGCGGCCAC
CAGATCAAGGCGGTCGAGAACATCCCGGTGATCAGCTGGCTGGCATTGCGCGGCCGCTGCAGCGCCTGCAAGGCGCCCAT
TTCCTGGCGCTACCCTGCCGTGGAGCTGGTGACCGGCGTGCTGACCGGTGCCTGCCTGTGGCATTTCGGGCCGACCTGGG
TGGCGGTGGCCTCGGCCGCGCTGCTGTGGTTCCTGATCGCCGGCTCGATGATCGACGCCGACACGCAACTGCTGCCCGAT
GCCATTACCCAGCCGCTGCTGTGGCTCGGCCTGCTGGTGAATCTGTTCGACATGTTCGCGCGGCTGCCGGATGCGGTGAT
CGGCGCGATGGCCGGGTATCTGTTCCTGTGGACCATCTACTGGGCCTACAAGCTGCTGCGCGGCCGGGAAGGCATGGGCT
ACGGCGATTTCAAGCTGATGGCCGCGCTGGGTGCCTGGTTCGGCTGGCAGGCGCTGCCGCTGCTGGTACTGCTGTCGTCG
GTGGTCGGTCTGGTGTTCGGGGCGGTGCGCATCGCGCGCGGCGCCAAGAGCGAATCGCCGTTTTCGTTCGGCCCGTTCAT
CGCGGGTGCCGGCGTCATCGCCCTGCTGGCCGGCCCGCAGCTGGTGGCATTGACGGGGCTCGCGCCGCTGCTGGCGCGGT
AA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-129)

• Type IV leader peptidase family (Peptidase_A24) (140-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	53.585	90.444	0.485
pilD	Vibrio campbellii strain DS40M4	49.819	94.539	0.471
pilD	Neisseria gonorrhoeae MS11	49.254	91.468	0.451
pilD	Acinetobacter nosocomialis M2	46.241	90.785	0.42
pilD	Acinetobacter baumannii D1279779	46.241	90.785	0.42