Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGG   Type   Machinery gene
Locus tag   SSU12_RS00810 Genome accession   NC_017619
Coordinates   123210..123620 (+) Length   136 a.a.
NCBI ID   WP_011921724.1    Uniprot ID   -
Organism   Streptococcus suis SS12     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 118210..128620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSU12_RS00770 (SSU12_0123) - 118547..118912 (+) 366 WP_002936568.1 DUF1033 family protein -
  SSU12_RS00775 (SSU12_0124) - 118947..119890 (-) 944 Protein_115 S66 peptidase family protein -
  SSU12_RS00780 (SSU12_0126) comGA 119976..120926 (+) 951 WP_011921718.1 competence type IV pilus ATPase ComGA Machinery gene
  SSU12_RS00785 (SSU12_0127) comGB 120838..121875 (+) 1038 WP_011921719.1 competence type IV pilus assembly protein ComGB Machinery gene
  SSU12_RS00790 (SSU12_0128) comGC 121877..122158 (+) 282 WP_011921720.1 competence type IV pilus major pilin ComGC Machinery gene
  SSU12_RS00795 (SSU12_0129) comGD 122139..122546 (+) 408 WP_011921721.1 competence type IV pilus minor pilin ComGD Machinery gene
  SSU12_RS00800 (SSU12_0130) comGE 122518..122811 (+) 294 WP_011921722.1 competence type IV pilus minor pilin ComGE Machinery gene
  SSU12_RS00805 (SSU12_0131) comGF/cglF 122798..123232 (+) 435 WP_011922561.1 competence type IV pilus minor pilin ComGF Machinery gene
  SSU12_RS00810 (SSU12_0132) comGG 123210..123620 (+) 411 WP_011921724.1 competence type IV pilus minor pilin ComGG Machinery gene
  SSU12_RS00815 (SSU12_0133) comGH 123677..124630 (+) 954 WP_011922562.1 class I SAM-dependent methyltransferase Machinery gene
  SSU12_RS00820 (SSU12_0134) - 124680..125867 (+) 1188 WP_012775422.1 acetate kinase -
  SSU12_RS00825 (SSU12_0136) - 126182..126733 (+) 552 WP_012774908.1 folate family ECF transporter S component -
  SSU12_RS00830 (SSU12_0137) - 126789..128045 (+) 1257 WP_011921729.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15303.73 Da        Isoelectric Point: 8.3464

>NTDB_id=40653 SSU12_RS00810 WP_011921724.1 123210..123620(+) (comGG) [Streptococcus suis SS12]
MLLKKKVKAGILLYALLMLAVFSLLLQFYLHRQEAESRLVQVARQETTAYIMAQMVLDKVEQDLQVEKIVTGAVVNEKEA
NLTTGSKQKENRGRVSFQEGQARYQLKGDQLLVTVELTSDGLYTYQFPFGLSSEGG

Nucleotide


Download         Length: 411 bp        

>NTDB_id=40653 SSU12_RS00810 WP_011921724.1 123210..123620(+) (comGG) [Streptococcus suis SS12]
ATGCTTTTAAAGAAAAAAGTTAAGGCTGGCATCCTACTCTATGCCCTTTTGATGCTGGCTGTTTTTAGTCTCTTGCTTCA
GTTTTATCTCCACCGCCAAGAGGCTGAGAGTCGCTTGGTACAGGTGGCAAGGCAAGAAACGACTGCTTATATCATGGCTC
AGATGGTCTTGGACAAGGTCGAGCAGGACCTGCAAGTAGAAAAAATAGTTACGGGAGCGGTAGTGAATGAAAAGGAAGCA
AATTTAACCACAGGTTCTAAGCAGAAGGAGAATAGAGGAAGGGTCTCCTTTCAAGAGGGACAGGCTCGTTATCAACTTAA
AGGAGACCAACTATTGGTTACAGTTGAGTTAACAAGTGATGGTCTGTATACCTATCAATTTCCTTTTGGGCTATCATCAG
AAGGAGGGTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG Streptococcus mutans UA140

36.296

99.265

0.36
  comGG Streptococcus mutans UA159

36.296

99.265

0.36

Multiple sequence alignment