Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   GO593_RS04630 Genome accession   NZ_CP046654
Coordinates   975540..976358 (-) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain ATCC 19606     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 970540..981358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO593_RS04615 (GO593_04615) pilE 970757..971182 (-) 426 WP_000788344.1 type IV pilin protein Machinery gene
  GO593_RS04620 (GO593_04620) pilY2 971179..971661 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  GO593_RS04625 (GO593_04625) pilY1 971674..975528 (-) 3855 WP_000768965.1 PilC/PilY family type IV pilus protein Machinery gene
  GO593_RS04630 (GO593_04630) pilX 975540..976358 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GO593_RS04635 (GO593_04635) pilW 976355..977356 (-) 1002 WP_000079195.1 PilW family protein Machinery gene
  GO593_RS04640 (GO593_04640) pilV 977357..977917 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  GO593_RS04645 (GO593_04645) fimU 977911..978384 (-) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GO593_RS04650 (GO593_04650) ispH 978554..979504 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GO593_RS04655 (GO593_04655) gmk 979627..980256 (+) 630 WP_000015937.1 guanylate kinase -
  GO593_RS04660 (GO593_04660) rpoZ 980329..980607 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GO593_RS04665 (GO593_04665) - 980646..980776 (+) 131 Protein_896 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=406468 GO593_RS04630 WP_000149377.1 975540..976358(-) (pilX) [Acinetobacter baumannii strain ATCC 19606]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=406468 GO593_RS04630 WP_000149377.1 975540..976358(-) (pilX) [Acinetobacter baumannii strain ATCC 19606]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGTGCAGCACTTAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACCTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGGGCTGGCAGCGCCAATAATGCTGTGGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGAAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGTATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989

Multiple sequence alignment