Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   GO593_RS04645 Genome accession   NZ_CP046654
Coordinates   977911..978384 (-) Length   157 a.a.
NCBI ID   WP_001214059.1    Uniprot ID   A0A009PK04
Organism   Acinetobacter baumannii strain ATCC 19606     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 972911..983384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO593_RS04630 (GO593_04630) pilX 975540..976358 (-) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GO593_RS04635 (GO593_04635) pilW 976355..977356 (-) 1002 WP_000079195.1 PilW family protein Machinery gene
  GO593_RS04640 (GO593_04640) pilV 977357..977917 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  GO593_RS04645 (GO593_04645) fimU 977911..978384 (-) 474 WP_001214059.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GO593_RS04650 (GO593_04650) ispH 978554..979504 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GO593_RS04655 (GO593_04655) gmk 979627..980256 (+) 630 WP_000015937.1 guanylate kinase -
  GO593_RS04660 (GO593_04660) rpoZ 980329..980607 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GO593_RS04665 (GO593_04665) - 980646..980776 (+) 131 Protein_896 hypothetical protein -
  GO593_RS04670 (GO593_04670) - 980816..982921 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.47 Da        Isoelectric Point: 9.3085

>NTDB_id=406471 GO593_RS04645 WP_001214059.1 977911..978384(-) (fimU) [Acinetobacter baumannii strain ATCC 19606]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=406471 GO593_RS04645 WP_001214059.1 977911..978384(-) (fimU) [Acinetobacter baumannii strain ATCC 19606]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994

Multiple sequence alignment