Detailed information    

insolico Bioinformatically predicted

Overview

Name   ciaH   Type   Regulator
Locus tag   GPA00_RS07820 Genome accession   NZ_CP046629
Coordinates   1582290..1583615 (-) Length   441 a.a.
NCBI ID   WP_157328220.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU G6     
Function   Required for optimal comC expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1577290..1588615
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GPA00_RS07795 (GPA00_07795) - 1577835..1578890 (-) 1056 WP_080651031.1 BMP family lipoprotein -
  GPA00_RS07800 (GPA00_07800) deoC 1579079..1579744 (-) 666 WP_157328218.1 deoxyribose-phosphate aldolase -
  GPA00_RS07805 (GPA00_07805) - 1580247..1580837 (-) 591 WP_024344058.1 class I SAM-dependent methyltransferase -
  GPA00_RS07810 (GPA00_07810) coaA 1580960..1581880 (+) 921 WP_033152659.1 type I pantothenate kinase -
  GPA00_RS07815 (GPA00_07815) rpsT 1581956..1582207 (+) 252 WP_004231769.1 30S ribosomal protein S20 -
  GPA00_RS07820 (GPA00_07820) ciaH 1582290..1583615 (-) 1326 WP_157328220.1 sensor histidine kinase Regulator
  GPA00_RS07825 (GPA00_07825) ciaR 1583605..1584279 (-) 675 WP_024344055.1 response regulator transcription factor Regulator
  GPA00_RS07830 (GPA00_07830) - 1584432..1586975 (-) 2544 WP_157328222.1 M1 family metallopeptidase -
  GPA00_RS07835 (GPA00_07835) phoU 1587184..1587837 (-) 654 WP_024344053.1 phosphate signaling complex protein PhoU -

Sequence

Protein


Download         Length: 441 a.a.        Molecular weight: 50148.99 Da        Isoelectric Point: 6.9250

>NTDB_id=406320 GPA00_RS07820 WP_157328220.1 1582290..1583615(-) (ciaH) [Streptococcus equinus strain CNU G6]
MLNNIQKKISTGTFSHFFHFFAVFTGIFVIMTIIILQIMRYGLYSSVDTTLQNAANNASDYVTRTMERSDSIQSDNTINE
SGKNKSSSNDGLSNVSVLLYDCNGKIVNALDAFIQFGSLTTSVNDDKIGEISEEKMTTIFGQTEKYHVLTVRVYSSDYPT
IQYATFLISVRQLDEANERYVTITITVMVIFWIISILASVYLANWTRKPILESYEKQKRFVENASHELRTPLAVLQNRLE
SLFRRPDATILDNSESIAASLDEVRNMRILTTNLLNLARRDDGLKVELEEIHPSTFNEIFENYQMIAHENNKKFTAHNLA
NRPIKSDKTLLKQLMTILFDNAIKYTGDDGVIEFTIKTTERQTILTIADNGPGVSDADKQKIFDRFYRVDKARTRQQGGF
GLGLSLAEQIVDALKGDIQVKDNKPKGTIFEVRFNRHNFGK

Nucleotide


Download         Length: 1326 bp        

>NTDB_id=406320 GPA00_RS07820 WP_157328220.1 1582290..1583615(-) (ciaH) [Streptococcus equinus strain CNU G6]
ATGCTGAATAATATACAGAAAAAAATATCAACGGGGACTTTCTCACACTTTTTCCATTTTTTTGCTGTGTTTACAGGGAT
TTTCGTTATTATGACAATTATTATCCTGCAAATCATGCGATATGGTTTATATTCTTCTGTCGACACGACGTTACAAAACG
CAGCTAATAATGCCAGTGATTACGTTACGAGAACGATGGAGAGAAGTGATTCGATTCAATCTGATAATACGATTAATGAG
TCAGGAAAAAATAAATCGAGTTCAAATGATGGATTGAGTAATGTTAGTGTCCTTTTGTATGATTGCAACGGTAAAATAGT
TAATGCTTTAGATGCCTTTATTCAATTTGGCTCACTAACGACGAGTGTTAATGATGATAAAATCGGTGAAATAAGCGAAG
AGAAGATGACTACGATTTTCGGTCAAACTGAAAAGTATCACGTCTTGACTGTCAGAGTTTATAGTAGTGATTATCCAACA
ATTCAATACGCAACCTTTCTAATTAGTGTTCGTCAGCTTGACGAGGCAAATGAAAGATATGTGACAATTACTATTACAGT
TATGGTTATCTTTTGGATTATTTCAATTTTAGCGAGTGTTTATCTTGCAAACTGGACTCGTAAACCGATTCTTGAAAGTT
ATGAAAAACAGAAACGCTTTGTTGAGAATGCCAGTCATGAGTTGAGAACGCCACTTGCTGTTTTGCAAAATCGTCTTGAA
AGTTTGTTTAGACGTCCAGATGCAACAATTTTAGATAATAGCGAAAGTATTGCTGCAAGTCTTGATGAAGTGCGAAATAT
GCGTATTCTGACAACAAATCTTTTAAATCTTGCTAGACGTGATGATGGTTTGAAAGTTGAATTGGAAGAGATTCATCCAT
CAACCTTTAACGAGATTTTTGAAAATTATCAGATGATTGCTCACGAAAATAATAAAAAGTTTACTGCACACAATTTAGCT
AATCGTCCGATAAAATCAGATAAGACTCTTTTGAAACAACTAATGACTATTTTATTTGATAATGCCATTAAGTACACTGG
TGATGATGGCGTTATTGAATTTACCATTAAAACAACAGAACGCCAAACTATTTTAACTATTGCTGATAACGGACCTGGTG
TTAGTGATGCCGATAAGCAGAAGATTTTTGATCGCTTTTACCGTGTTGACAAGGCAAGGACGCGCCAACAAGGTGGATTT
GGTTTGGGTTTGTCTCTAGCGGAGCAAATAGTTGATGCTTTGAAGGGTGATATTCAGGTTAAAGATAACAAACCAAAAGG
AACTATTTTTGAAGTTCGTTTCAACAGACATAATTTTGGTAAATAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(327-434)

His Kinase A (phospho-acceptor) domain (HisKA)

(217-283)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ciaH Streptococcus mutans UA159

59.217

98.413

0.583
  ciaH Streptococcus pneumoniae Rx1

51.606

98.866

0.51
  ciaH Streptococcus pneumoniae D39

51.606

98.866

0.51
  ciaH Streptococcus pneumoniae R6

51.606

98.866

0.51
  ciaH Streptococcus pneumoniae TIGR4

51.606

98.866

0.51

Multiple sequence alignment