Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA/cflA   Type   Machinery gene
Locus tag   GO596_RS00680 Genome accession   NZ_CP046628
Coordinates   133460..134758 (-) Length   432 a.a.
NCBI ID   WP_157339042.1    Uniprot ID   -
Organism   Streptococcus equinus strain CNU 77-23     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 128460..139758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO596_RS00670 (GO596_00670) hpf 132170..132718 (-) 549 WP_024344660.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  GO596_RS00675 (GO596_00675) - 132795..133460 (-) 666 WP_157339041.1 ComF family protein -
  GO596_RS00680 (GO596_00680) comFA/cflA 133460..134758 (-) 1299 WP_157339042.1 DEAD/DEAH box helicase Machinery gene
  GO596_RS00685 (GO596_00685) - 134813..135439 (+) 627 WP_157339043.1 YigZ family protein -
  GO596_RS00690 (GO596_00690) cysK 135537..136466 (+) 930 WP_021141798.1 cysteine synthase A -
  GO596_RS00695 (GO596_00695) - 136536..136892 (-) 357 WP_027968108.1 S1 RNA-binding domain-containing protein -
  GO596_RS00700 (GO596_00700) - 136892..138292 (-) 1401 WP_029876003.1 bifunctional Cof-type HAD-IIB family hydrolase/peptidylprolyl isomerase -
  GO596_RS00705 (GO596_00705) - 138416..139060 (-) 645 WP_024344653.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 432 a.a.        Molecular weight: 49144.33 Da        Isoelectric Point: 9.3807

>NTDB_id=406209 GO596_RS00680 WP_157339042.1 133460..134758(-) (comFA/cflA) [Streptococcus equinus strain CNU 77-23]
MEDKNDYYGRIFVESQLSDELKEEAEKLPSMVKRKDDLTCNRCGSIVLPDNILQTGQTYCRECLVFGRNISDSYLYYFPQ
KSFPKNNSLNWQGQLTLYQNEVSEGMLSGIAEKKDLLVHAVTGAGKTEMIYHSVAKIIDDGGCVCIASPRIDVCLELYKR
MSRDFSCPITLLHGEAEPYKRAPLIIATTHQLLKFYQAFDLLIIDEVDAFPFVDNKMLYYAVNQSLKKDGVKIFLTATST
DELDKKVRKGDLKKLHLARRFHANPLVVPKMLWLSGVLKSMKKGKIPKKLDLLLKNQRKSGYPLLIFFPNIEQGKRFSMV
LQEKFPTEKIGFVSSQSEDRLELVEKFRKKEITILVSTTILERGVTFPCVDVFVVLANHKLYTKSALVQISGRVGRAAER
PTGELLFLHDGATKSMQQAIKEIKEMNKKGGF

Nucleotide


Download         Length: 1299 bp        

>NTDB_id=406209 GO596_RS00680 WP_157339042.1 133460..134758(-) (comFA/cflA) [Streptococcus equinus strain CNU 77-23]
ATGGAAGATAAAAATGACTATTATGGAAGAATTTTTGTTGAGTCTCAATTGTCTGATGAGTTAAAAGAAGAAGCTGAAAA
ACTTCCTTCTATGGTAAAAAGAAAAGACGATCTTACGTGTAATCGTTGCGGAAGCATTGTTTTACCAGATAATATTTTAC
AAACTGGTCAGACTTACTGCAGAGAATGTCTAGTTTTTGGTCGTAACATCAGTGATTCTTATCTATATTACTTTCCGCAA
AAAAGTTTTCCAAAAAATAATTCTCTAAACTGGCAAGGGCAACTGACCCTTTATCAAAATGAAGTGTCAGAAGGTATGTT
GTCAGGAATTGCTGAAAAGAAAGATTTATTAGTTCATGCTGTGACAGGAGCTGGTAAGACAGAGATGATTTATCACTCAG
TAGCAAAAATAATCGATGACGGTGGTTGTGTTTGTATTGCTAGCCCACGAATTGATGTTTGTTTAGAACTTTATAAACGT
ATGTCTCGTGATTTTTCATGTCCGATTACTTTATTACATGGGGAAGCTGAGCCTTACAAACGAGCACCGCTTATTATTGC
AACAACTCATCAACTTTTAAAATTCTACCAAGCATTTGATTTATTAATTATTGATGAAGTTGATGCCTTTCCATTTGTTG
ACAATAAAATGCTGTATTACGCAGTAAATCAATCTTTAAAAAAAGATGGTGTCAAAATATTTTTAACAGCCACATCGACA
GATGAATTAGATAAAAAAGTTCGAAAAGGCGACTTAAAAAAATTGCATTTAGCCAGGCGTTTTCACGCCAATCCTTTGGT
TGTTCCTAAAATGCTCTGGCTTAGTGGGGTGTTAAAGTCAATGAAAAAAGGGAAAATACCTAAAAAATTAGACTTGCTGC
TTAAAAATCAAAGAAAATCTGGATACCCCTTACTAATCTTTTTTCCAAATATAGAGCAGGGAAAAAGATTTTCGATGGTT
CTGCAAGAAAAATTTCCTACTGAGAAGATTGGTTTTGTGTCAAGTCAGAGCGAAGATAGACTTGAATTAGTTGAAAAATT
TAGAAAGAAAGAAATAACAATTTTAGTCAGCACAACCATCTTAGAACGTGGAGTCACGTTTCCTTGTGTTGACGTATTTG
TTGTATTAGCAAATCACAAATTATACACTAAAAGTGCCTTGGTTCAAATTTCTGGGCGAGTCGGTAGAGCTGCTGAACGA
CCAACAGGAGAATTATTATTTTTGCACGATGGCGCTACAAAATCTATGCAACAAGCGATTAAAGAAATAAAGGAAATGAA
CAAGAAAGGAGGATTTTGA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(99-244)

Helicase conserved C-terminal domain (Helicase_C)

(291-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA/cflA Streptococcus pneumoniae Rx1

62.763

98.843

0.62
  comFA/cflA Streptococcus pneumoniae D39

62.763

98.843

0.62
  comFA/cflA Streptococcus pneumoniae R6

62.763

98.843

0.62
  comFA/cflA Streptococcus pneumoniae TIGR4

62.763

98.843

0.62
  comFA/cflA Streptococcus mitis NCTC 12261

61.111

100

0.611
  comFA/cflA Streptococcus mitis SK321

60.648

100

0.606
  comFA Lactococcus lactis subsp. cremoris KW2

48.815

97.685

0.477
  comFA Latilactobacillus sakei subsp. sakei 23K

36.782

100

0.37
  comFA Bacillus subtilis subsp. subtilis str. 168

36.054

100

0.368

Multiple sequence alignment