Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GO995_RS06950 Genome accession   NZ_CP046624
Coordinates   1394192..1395001 (-) Length   269 a.a.
NCBI ID   WP_074602529.1    Uniprot ID   A0AAE8L3J1
Organism   Streptococcus ruminicola strain CNU_G3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1389192..1400001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO995_RS06940 (GO995_06940) smc 1389593..1393132 (-) 3540 WP_157629240.1 chromosome segregation protein SMC -
  GO995_RS06945 (GO995_06945) rnc 1393284..1393970 (-) 687 WP_020917219.1 ribonuclease III -
  GO995_RS06950 (GO995_06950) vicX 1394192..1395001 (-) 810 WP_074602529.1 MBL fold metallo-hydrolase Regulator
  GO995_RS06955 (GO995_06955) vicK 1395002..1396354 (-) 1353 WP_157629241.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GO995_RS06960 (GO995_06960) vicR 1396347..1397057 (-) 711 WP_039696509.1 response regulator YycF Regulator
  GO995_RS06965 (GO995_06965) - 1397369..1398133 (+) 765 WP_039696508.1 amino acid ABC transporter ATP-binding protein -
  GO995_RS06970 (GO995_06970) - 1398144..1398956 (+) 813 WP_157629242.1 transporter substrate-binding domain-containing protein -
  GO995_RS06975 (GO995_06975) - 1398972..1399679 (+) 708 WP_039696506.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30096.95 Da        Isoelectric Point: 5.5642

>NTDB_id=406177 GO995_RS06950 WP_074602529.1 1394192..1395001(-) (vicX) [Streptococcus ruminicola strain CNU_G3]
MSENAFKYSVLASGSTGNSFYVETPQKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVLARRYNLD
VYANAKTWQMIDERNMIGKLDVGQKHVFERGKTLTFGDIDIESFGVSHDAVDPQFYRLMKDNKSFVVLTDTGYVSDRMAG
VIENADGYLIESNHDVEILRAGSYPWSLKQRILSDRGHLSNEDGADTMIRTIGNRTKRIYLGHLSKENNIKELAHMTMEN
NLMQADFAVGHDMTVFDTSPDEATPLAGL

Nucleotide


Download         Length: 810 bp        

>NTDB_id=406177 GO995_RS06950 WP_074602529.1 1394192..1395001(-) (vicX) [Streptococcus ruminicola strain CNU_G3]
ATGTCTGAGAATGCTTTTAAATACAGTGTCTTAGCCTCCGGTTCAACTGGAAATTCATTTTATGTGGAAACGCCACAAAA
ACGTCTTTTGATAGATGCAGGTTTGACTGGTAAGAAAATTACCAGTCTTCTTGCTGAAATTGACCGAAAACCAGAAGATT
TGGATGCTATTTTGATTACGCACGAACACTCTGATCACATTAAAGGAGTAGGAGTGCTGGCTCGCAGATACAATCTTGAT
GTATATGCCAATGCCAAAACTTGGCAAATGATTGATGAGCGCAACATGATTGGAAAACTTGATGTTGGGCAAAAACATGT
CTTTGAACGTGGTAAAACATTGACTTTTGGTGATATTGATATTGAAAGTTTTGGAGTCAGTCACGATGCTGTCGATCCGC
AATTTTACCGTTTGATGAAAGATAATAAGTCATTTGTCGTTCTGACAGATACTGGTTATGTTAGTGACCGAATGGCGGGT
GTGATTGAAAATGCTGATGGTTATCTGATTGAGTCAAACCATGATGTTGAGATTTTGCGTGCGGGTTCTTATCCGTGGAG
CTTGAAACAACGTATTCTATCTGATCGTGGTCACTTGTCAAATGAAGATGGTGCTGATACCATGATTCGTACTATCGGCA
ATCGCACAAAAAGAATTTATCTTGGACACTTGAGTAAAGAAAATAATATCAAAGAATTGGCTCATATGACCATGGAAAAT
AACTTGATGCAAGCTGATTTTGCTGTTGGTCATGACATGACTGTTTTTGATACATCACCTGATGAAGCAACGCCTTTAGC
AGGTCTATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment