Detailed information NTG0406066

Bioinformatically predicted

Overview

• Name: pilC
• Type: Machinery gene
• Locus tag: GO600_RS08230
• Genome accession: NZ_CP046617
• Coordinates: 1553811..1555031 (-)
• Length: 406 a.a.
• NCBI ID: WP_028494376.1
• Uniprot ID: -
• Organism: Thermus antranikianii strain JCM 19900
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1548811..1560031

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GO600_RS08205 (GO600_08170)	-	1549392..1550471 (+)	1080	WP_028494371.1	prephenate dehydrogenase/arogenate dehydrogenase family protein	-
GO600_RS08210 (GO600_08175)	-	1550468..1551403 (-)	936	WP_028494372.1	GGDEF domain-containing protein	-
GO600_RS08215 (GO600_08180)	-	1551454..1552821 (-)	1368	WP_028494373.1	FAD-binding oxidoreductase	-
GO600_RS08220 (GO600_08185)	-	1552831..1553313 (-)	483	WP_028494374.1	hypothetical protein	-
GO600_RS08225 (GO600_08190)	-	1553384..1553836 (+)	453	WP_028494375.1	EVE domain-containing protein	-
GO600_RS08230 (GO600_08195)	pilC	1553811..1555031 (-)	1221	WP_028494376.1	type II secretion system F family protein	Machinery gene
GO600_RS08235 (GO600_08200)	-	1555030..1555623 (+)	594	WP_028494377.1	L-threonylcarbamoyladenylate synthase	-
GO600_RS08240 (GO600_08205)	scpB	1555616..1556137 (+)	522	WP_028494378.1	SMC-Scp complex subunit ScpB	-
GO600_RS08245 (GO600_08210)	-	1556084..1557163 (-)	1080	WP_028494379.1	PIG-L deacetylase family protein	-
GO600_RS08250 (GO600_08215)	-	1557194..1557814 (+)	621	WP_028494380.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 406 a.a.
• Molecular weight: 44851.96 Da
• Isoelectric Point: 10.0305

>NTDB_id=406066 GO600_RS08230 WP_028494376.1 1553811..1555031(-) (pilC) [Thermus antranikianii strain JCM 19900]
MPVYQYKARDRQGRLVEATIEAEDLRTAARLLRDRGLFVAEIKEPGRGLQAEVRLPALERGPGLKDLAIFSRQLATMLGA
GLTLLQSLSILERQTENKKFREIIKKVRTDIEGGMAFSDALAKHKLFSRLYVNLVRAGETSGGLDVILDRLATFLEKDLE
LRGKIRSAMTYPVIVFVFAVGVAYFLLTGIVPQFAQILTDLGSELPLLTRFLIALSNFLRAATLPLVLLAVVLFFVYRWY
YRTPQGRKVVDRIKLRVPVFGNLNRKTAVARFSRTLALLLSSGVNIVESLDITKGTAGNSVVEEIVDMAKLKVQQGEPLN
LTLAQHPFVFPPMVSSMVAIGEETGALDTLLSKIADFYEREVDEAVASLTAAIEPLMIIFLGVIVGMIVAGMFLPLFKII
GTLSAQ

Nucleotide

• Length: 1221 bp

>NTDB_id=406066 GO600_RS08230 WP_028494376.1 1553811..1555031(-) (pilC) [Thermus antranikianii strain JCM 19900]
ATGCCAGTCTACCAGTATAAGGCCCGCGACCGCCAGGGCCGCCTGGTGGAGGCCACCATCGAGGCGGAGGACCTGCGCAC
CGCCGCCAGGCTCCTGAGGGACCGGGGGCTTTTCGTGGCCGAGATCAAGGAGCCGGGGAGGGGCCTGCAGGCCGAGGTGC
GCCTTCCTGCCCTGGAGAGGGGTCCTGGCCTGAAAGACCTGGCCATTTTCTCCCGGCAGCTGGCCACCATGCTGGGGGCA
GGGCTTACGCTTTTGCAGTCCCTTTCCATCCTGGAAAGGCAGACCGAGAACAAGAAGTTCCGGGAGATCATCAAGAAGGT
CCGCACCGACATCGAAGGGGGCATGGCCTTTTCCGATGCCCTGGCCAAGCACAAGCTCTTCTCCCGGCTTTACGTGAACC
TGGTGCGGGCCGGGGAGACCTCGGGCGGGCTGGACGTGATCCTGGACCGCCTGGCCACCTTCCTGGAGAAGGACCTGGAG
CTCAGGGGCAAGATCCGTAGCGCCATGACCTATCCCGTGATCGTCTTCGTCTTCGCCGTGGGCGTGGCCTACTTCCTCCT
CACGGGCATCGTGCCCCAGTTTGCCCAGATCCTCACGGACCTCGGCTCGGAGCTCCCCCTCCTCACCCGGTTCCTCATCG
CCCTTTCCAACTTCCTGCGGGCGGCCACCTTGCCCCTCGTGCTTTTGGCGGTGGTTCTCTTCTTCGTCTACCGCTGGTAC
TACCGCACCCCCCAGGGGCGGAAGGTGGTGGACCGGATCAAGCTCCGCGTCCCCGTCTTCGGCAACCTCAACCGCAAGAC
CGCCGTGGCCCGCTTCTCCCGTACCTTGGCCCTCCTCCTTTCCAGCGGGGTGAACATCGTGGAGTCCCTGGACATTACCA
AGGGGACGGCGGGTAACAGCGTGGTGGAGGAGATCGTGGACATGGCCAAGCTCAAGGTCCAGCAAGGGGAGCCTTTAAAC
CTCACCCTGGCCCAGCATCCCTTCGTCTTCCCCCCCATGGTGAGCTCCATGGTGGCCATCGGGGAGGAGACGGGAGCCCT
GGACACCCTCCTTTCCAAGATCGCCGACTTCTACGAGCGGGAGGTGGACGAGGCGGTGGCCAGCCTCACCGCCGCCATCG
AGCCCCTCATGATCATCTTCCTGGGCGTGATCGTGGGCATGATCGTGGCGGGGATGTTCCTGCCCCTCTTCAAGATCATC
GGCACCCTTTCCGCGCAATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (272-395)

• Type II secretion system (T2SS), protein F (T2SSF) (70-192)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilC	Thermus thermophilus HB27	91.872	100	0.919
pilC	Acinetobacter baylyi ADP1	36.973	99.261	0.367
pilC	Pseudomonas stutzeri DSM 10701	37.157	98.768	0.367