Detailed information NTG0405924

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: HZR12_RS06235
• Genome accession: NZ_CP058615
• Coordinates: 1215472..1216074 (+)
• Length: 200 a.a.
• NCBI ID: WP_048665330.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain 110900
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1210472..1221074

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZR12_RS06195 (HZR12_06195)	-	1210555..1210674 (+)	120	WP_000840602.1	hypothetical protein	-
HZR12_RS06200 (HZR12_06200)	mreC	1210874..1211716 (+)	843	WP_000911041.1	rod shape-determining protein MreC	-
HZR12_RS06205 (HZR12_06205)	mreD	1211716..1212246 (+)	531	WP_001259925.1	rod shape-determining protein MreD	-
HZR12_RS06210 (HZR12_06210)	rplU	1212413..1212721 (+)	309	WP_000457386.1	50S ribosomal protein L21	-
HZR12_RS06215 (HZR12_06215)	-	1212727..1213047 (+)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
HZR12_RS06220 (HZR12_06220)	rpmA	1213059..1213343 (+)	285	WP_000916187.1	50S ribosomal protein L27	-
HZR12_RS06225 (HZR12_06225)	obgE	1213698..1214990 (+)	1293	WP_000496100.1	GTPase ObgE	-
HZR12_RS06230 (HZR12_06230)	-	1215003..1215458 (+)	456	WP_000368902.1	ACT domain-containing protein	-
HZR12_RS06235 (HZR12_06235)	ruvA	1215472..1216074 (+)	603	WP_048665330.1	Holliday junction branch migration protein RuvA	Machinery gene
HZR12_RS06240 (HZR12_06240)	ruvB	1216106..1217110 (+)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
HZR12_RS06245 (HZR12_06245)	queA	1217112..1218137 (+)	1026	WP_001019172.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
HZR12_RS06250 (HZR12_06250)	tgt	1218160..1219299 (+)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
HZR12_RS06255 (HZR12_06255)	yajC	1219318..1219578 (+)	261	WP_001160682.1	preprotein translocase subunit YajC	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22247.44 Da
• Isoelectric Point: 5.6622

>NTDB_id=405924 HZR12_RS06235 WP_048665330.1 1215472..1216074(+) (ruvA) [Staphylococcus aureus strain 110900]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVIITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=405924 HZR12_RS06235 WP_048665330.1 1215472..1216074(+) (ruvA) [Staphylococcus aureus strain 110900]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGATAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (156-197)

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425