Detailed information NTG0405866

Bioinformatically predicted

Overview

• Name: ruvA
• Type: Machinery gene
• Locus tag: HZR13_RS08280
• Genome accession: NZ_CP058613
• Coordinates: 1682760..1683362 (-)
• Length: 200 a.a.
• NCBI ID: WP_048665330.1
• Uniprot ID: -
• Organism: Staphylococcus aureus strain 128254
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1677760..1688362

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HZR13_RS08260 (HZR13_08260)	yajC	1679256..1679516 (-)	261	WP_001160682.1	preprotein translocase subunit YajC	-
HZR13_RS08265 (HZR13_08265)	tgt	1679535..1680674 (-)	1140	WP_001112045.1	tRNA guanosine(34) transglycosylase Tgt	-
HZR13_RS08270 (HZR13_08270)	queA	1680697..1681722 (-)	1026	WP_001019172.1	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	-
HZR13_RS08275 (HZR13_08275)	ruvB	1681724..1682728 (-)	1005	WP_001005767.1	Holliday junction branch migration DNA helicase RuvB	Machinery gene
HZR13_RS08280 (HZR13_08280)	ruvA	1682760..1683362 (-)	603	WP_048665330.1	Holliday junction branch migration protein RuvA	Machinery gene
HZR13_RS08285 (HZR13_08285)	-	1683376..1683831 (-)	456	WP_000368902.1	ACT domain-containing protein	-
HZR13_RS08290 (HZR13_08290)	obgE	1683844..1685136 (-)	1293	WP_000496100.1	GTPase ObgE	-
HZR13_RS08295 (HZR13_08295)	rpmA	1685491..1685775 (-)	285	WP_000916187.1	50S ribosomal protein L27	-
HZR13_RS08300 (HZR13_08300)	-	1685787..1686107 (-)	321	WP_000633692.1	ribosomal-processing cysteine protease Prp	-
HZR13_RS08305 (HZR13_08305)	rplU	1686113..1686421 (-)	309	WP_000457386.1	50S ribosomal protein L21	-
HZR13_RS08310 (HZR13_08310)	mreD	1686588..1687118 (-)	531	WP_001259925.1	rod shape-determining protein MreD	-
HZR13_RS08315 (HZR13_08315)	mreC	1687118..1687960 (-)	843	WP_000911041.1	rod shape-determining protein MreC	-
HZR13_RS08320 (HZR13_08320)	-	1688160..1688279 (-)	120	WP_000840602.1	hypothetical protein	-

Sequence

Protein

• Length: 200 a.a.
• Molecular weight: 22247.44 Da
• Isoelectric Point: 5.6622

>NTDB_id=405866 HZR13_RS08280 WP_048665330.1 1682760..1683362(-) (ruvA) [Staphylococcus aureus strain 128254]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVIITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide

• Length: 603 bp

>NTDB_id=405866 HZR13_RS08280 WP_048665330.1 1682760..1683362(-) (ruvA) [Staphylococcus aureus strain 128254]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGATAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

• RuvA, C-terminal domain (RuvA_C) (156-197)

• Helix-hairpin-helix domain (HHH_5) (71-128)

• RuvA N terminal domain (RuvA_N) (1-61)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ruvA	Streptococcus pneumoniae TIGR4	46.231	99.5	0.46
ruvA	Streptococcus pneumoniae R6	45.729	99.5	0.455
ruvA	Streptococcus pneumoniae D39	45.729	99.5	0.455
ruvA	Bacillus subtilis subsp. subtilis str. 168	42.714	99.5	0.425