Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   GO004_RS16930 Genome accession   NZ_CP046591
Coordinates   3250851..3252242 (+) Length   463 a.a.
NCBI ID   WP_038427948.1    Uniprot ID   -
Organism   Bacillus subtilis strain R31     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3245851..3257242
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS16910 (GO004_16905) yvyE 3247003..3247656 (-) 654 WP_003227979.1 YigZ family protein -
  GO004_RS16915 (GO004_16910) degS 3247873..3249030 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  GO004_RS16920 (GO004_16915) degU 3249113..3249802 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GO004_RS16925 (GO004_16920) fakBA 3249900..3250745 (+) 846 WP_003244125.1 DegV family protein -
  GO004_RS16930 (GO004_16925) comFA 3250851..3252242 (+) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  GO004_RS16935 (GO004_16930) comFB 3252302..3252598 (+) 297 WP_015483764.1 late competence protein ComFB -
  GO004_RS16940 (GO004_16935) comFC 3252562..3253284 (+) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  GO004_RS16945 (GO004_16940) yvyF 3253358..3253777 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GO004_RS16950 (GO004_16945) flgM 3253858..3254124 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  GO004_RS16955 (GO004_16950) flgN 3254140..3254622 (+) 483 WP_003227999.1 flagellar protein FlgN -
  GO004_RS16960 (GO004_16955) flgK 3254641..3256164 (+) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  GO004_RS16965 (GO004_16960) flgL 3256175..3257071 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52577.64 Da        Isoelectric Point: 10.0393

>NTDB_id=405821 GO004_RS16930 WP_038427948.1 3250851..3252242(+) (comFA) [Bacillus subtilis strain R31]
MNVPVEKNSSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHVKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIFFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=405821 GO004_RS16930 WP_038427948.1 3250851..3252242(+) (comFA) [Bacillus subtilis strain R31]
GTGAATGTGCCAGTTGAAAAAAACAGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCGCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCATTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATGTAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATCTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCGTCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTTCTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(326-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.568

100

0.996

Multiple sequence alignment