Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   GO004_RS16920 Genome accession   NZ_CP046591
Coordinates   3249113..3249802 (+) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain R31     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3244113..3254802
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS16900 (GO004_16895) tagO 3244679..3245755 (+) 1077 WP_003227975.1 MraY family glycosyltransferase -
  GO004_RS16905 (GO004_16900) tagV 3245828..3247003 (-) 1176 WP_088467417.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  GO004_RS16910 (GO004_16905) yvyE 3247003..3247656 (-) 654 WP_003227979.1 YigZ family protein -
  GO004_RS16915 (GO004_16910) degS 3247873..3249030 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  GO004_RS16920 (GO004_16915) degU 3249113..3249802 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GO004_RS16925 (GO004_16920) fakBA 3249900..3250745 (+) 846 WP_003244125.1 DegV family protein -
  GO004_RS16930 (GO004_16925) comFA 3250851..3252242 (+) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  GO004_RS16935 (GO004_16930) comFB 3252302..3252598 (+) 297 WP_015483764.1 late competence protein ComFB -
  GO004_RS16940 (GO004_16935) comFC 3252562..3253284 (+) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  GO004_RS16945 (GO004_16940) yvyF 3253358..3253777 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GO004_RS16950 (GO004_16945) flgM 3253858..3254124 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  GO004_RS16955 (GO004_16950) flgN 3254140..3254622 (+) 483 WP_003227999.1 flagellar protein FlgN -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=405820 GO004_RS16920 WP_003219701.1 3249113..3249802(+) (degU) [Bacillus subtilis strain R31]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=405820 GO004_RS16920 WP_003219701.1 3249113..3249802(+) (degU) [Bacillus subtilis strain R31]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGGGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment