Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   GO004_RS16940 Genome accession   NZ_CP046591
Coordinates   3252562..3253284 (+) Length   240 a.a.
NCBI ID   WP_038427947.1    Uniprot ID   -
Organism   Bacillus subtilis strain R31     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3247562..3258284
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GO004_RS16915 (GO004_16910) degS 3247873..3249030 (+) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  GO004_RS16920 (GO004_16915) degU 3249113..3249802 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  GO004_RS16925 (GO004_16920) fakBA 3249900..3250745 (+) 846 WP_003244125.1 DegV family protein -
  GO004_RS16930 (GO004_16925) comFA 3250851..3252242 (+) 1392 WP_038427948.1 ATP-dependent helicase ComFA Machinery gene
  GO004_RS16935 (GO004_16930) comFB 3252302..3252598 (+) 297 WP_015483764.1 late competence protein ComFB -
  GO004_RS16940 (GO004_16935) comFC 3252562..3253284 (+) 723 WP_038427947.1 comF operon protein ComFC Machinery gene
  GO004_RS16945 (GO004_16940) yvyF 3253358..3253777 (+) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  GO004_RS16950 (GO004_16945) flgM 3253858..3254124 (+) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  GO004_RS16955 (GO004_16950) flgN 3254140..3254622 (+) 483 WP_003227999.1 flagellar protein FlgN -
  GO004_RS16960 (GO004_16955) flgK 3254641..3256164 (+) 1524 WP_015714798.1 flagellar hook-associated protein FlgK -
  GO004_RS16965 (GO004_16960) flgL 3256175..3257071 (+) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  GO004_RS16970 (GO004_16965) yviE 3257118..3257693 (+) 576 WP_015384781.1 DUF6470 family protein -
  GO004_RS16975 (GO004_16970) fliW 3257714..3258145 (+) 432 WP_003228007.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27424.72 Da        Isoelectric Point: 9.4911

>NTDB_id=405822 GO004_RS16940 WP_038427947.1 3252562..3253284(+) (comFC) [Bacillus subtilis strain R31]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKEALSRFKFRGDAEIINAFKSDFSSTFSKVYPDKQFVLVPIPLSKEREEERGFNQAQLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSERIFDTKNNSAAGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=405822 GO004_RS16940 WP_038427947.1 3252562..3253284(+) (comFC) [Bacillus subtilis strain R31]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCTCTTTTTTTATTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAGCGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCAGTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACAGCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTATC
AGAGCGCATTTTTGATACAAAAAATAATTCAGCAGCAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment