Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GNK04_RS22835 Genome accession   NZ_CP046564
Coordinates   4480125..4480637 (-) Length   170 a.a.
NCBI ID   WP_098445609.1    Uniprot ID   A0A845ESU1
Organism   Bacillus sp. N1-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4475125..4485637
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNK04_RS22810 (GNK04_22800) rplI 4475297..4475740 (-) 444 WP_159786940.1 50S ribosomal protein L9 -
  GNK04_RS22815 (GNK04_22805) - 4475737..4477713 (-) 1977 WP_159786943.1 DHH family phosphoesterase -
  GNK04_RS22820 (GNK04_22810) - 4477729..4478655 (-) 927 WP_159786946.1 YybS family protein -
  GNK04_RS22825 (GNK04_22815) - 4479378..4479674 (-) 297 WP_159786949.1 HPr family phosphocarrier protein -
  GNK04_RS22830 (GNK04_22820) rpsR 4479825..4480061 (-) 237 WP_098445608.1 30S ribosomal protein S18 -
  GNK04_RS22835 (GNK04_22825) ssbA 4480125..4480637 (-) 513 WP_098445609.1 single-stranded DNA-binding protein Machinery gene
  GNK04_RS22840 (GNK04_22830) rpsF 4480664..4480960 (-) 297 WP_048311133.1 30S ribosomal protein S6 -
  GNK04_RS22845 (GNK04_22835) ychF 4481206..4482306 (-) 1101 WP_098445610.1 redox-regulated ATPase YchF -
  GNK04_RS22850 (GNK04_22840) - 4482502..4482699 (-) 198 WP_098445611.1 DUF951 domain-containing protein -
  GNK04_RS22855 (GNK04_22845) - 4482713..4483597 (-) 885 WP_240904005.1 mechanosensitive ion channel family protein -
  GNK04_RS22860 (GNK04_22850) - 4483623..4484645 (-) 1023 WP_159786952.1 hypothetical protein -
  GNK04_RS22865 (GNK04_22855) yyaC 4484771..4485400 (+) 630 WP_159786955.1 spore protease YyaC -

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 18545.11 Da        Isoelectric Point: 4.9557

>NTDB_id=405570 GNK04_RS22835 WP_098445609.1 4480125..4480637(-) (ssbA) [Bacillus sp. N1-1]
MLNRVVLVGRLTKDPELRYTPSGVAVANFTLAVNRPFTNQQGDREADFINIVVWRRQAENAANFLKKGSLAGVDGRVQTR
SYDNSQGQRVFVTEVMAESVQFLEPKGSNQGGGGSGNSSNYGGGNQNRETGGYGNQNQNRDNNRDHSNFGDDPFASDGKP
IDISDDDLPF

Nucleotide


Download         Length: 513 bp        

>NTDB_id=405570 GNK04_RS22835 WP_098445609.1 4480125..4480637(-) (ssbA) [Bacillus sp. N1-1]
ATGCTGAATCGCGTCGTATTAGTTGGACGTTTAACAAAAGACCCTGAATTGCGTTATACCCCTAGTGGCGTAGCGGTGGC
GAACTTCACACTTGCTGTGAATCGCCCGTTTACGAATCAGCAGGGAGACCGCGAAGCTGATTTTATCAACATTGTTGTAT
GGCGCAGACAGGCAGAAAATGCAGCCAATTTCTTGAAAAAAGGCAGCCTTGCTGGTGTAGATGGACGAGTTCAGACTCGC
TCTTATGATAATAGCCAGGGACAGCGTGTGTTTGTGACAGAAGTGATGGCTGAAAGCGTCCAATTTCTCGAGCCTAAAGG
TTCTAACCAAGGCGGTGGCGGAAGCGGCAACAGTAGCAACTACGGTGGCGGCAACCAAAACAGAGAAACCGGCGGTTACG
GGAATCAGAACCAAAATCGTGATAACAACCGTGATCACTCCAATTTTGGAGATGACCCGTTTGCGAGCGATGGCAAGCCG
ATCGACATTTCAGATGATGACTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A845ESU1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

69.364

100

0.706
  ssb Latilactobacillus sakei subsp. sakei 23K

55.882

100

0.559
  ssbB Bacillus subtilis subsp. subtilis str. 168

60.377

62.353

0.376

Multiple sequence alignment