Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   GNK04_RS14300 Genome accession   NZ_CP046564
Coordinates   2748057..2749754 (-) Length   565 a.a.
NCBI ID   WP_159783051.1    Uniprot ID   A0A7Z2QCF3
Organism   Bacillus sp. N1-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2743057..2754754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNK04_RS14285 (GNK04_14285) - 2745207..2745446 (+) 240 WP_240903935.1 DUF2627 domain-containing protein -
  GNK04_RS14290 (GNK04_14290) spo0A 2745592..2746392 (-) 801 WP_159783049.1 sporulation transcription factor Spo0A Regulator
  GNK04_RS14295 (GNK04_14295) spoIVB 2746637..2747932 (-) 1296 WP_240903936.1 SpoIVB peptidase -
  GNK04_RS14300 (GNK04_14300) recN 2748057..2749754 (-) 1698 WP_159783051.1 DNA repair protein RecN Machinery gene
  GNK04_RS14305 (GNK04_14305) argR 2749789..2750238 (-) 450 WP_159783053.1 transcriptional regulator ArgR -
  GNK04_RS14310 (GNK04_14310) - 2750406..2751212 (-) 807 WP_159783055.1 TlyA family RNA methyltransferase -
  GNK04_RS14315 (GNK04_14315) dxs 2751219..2753111 (-) 1893 WP_159783056.1 1-deoxy-D-xylulose-5-phosphate synthase -
  GNK04_RS14320 (GNK04_14320) - 2753130..2753738 (-) 609 WP_098444162.1 hypothetical protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63798.05 Da        Isoelectric Point: 4.7138

>NTDB_id=405551 GNK04_RS14300 WP_159783051.1 2748057..2749754(-) (recN) [Bacillus sp. N1-1]
MLAELSIRNFAIIEAITVSFERGLTVLTGETGAGKSIIIDAIGLLVGGRGSAEFVRYGTKKAEIEGLFHIDTNHPTVQKL
EDVGIEFTDGMVVLRRDISHTGKSICRVNGKLVTLGILREIGQTLIDIHGQHEHQDLMQSDKHLTLLDQFGERSIGPALF
EYREIFQRYKKIQQQMKNLTENEQQMAHRLDLIQYQLEEITKAELSPNEDDQLMDEKLRLGNFEKLYTALQDVYDSLHGD
NKGLDWVGLAMSQLESVADLDEELQGYHEEVANQFYLLEETAGKLNTYRDQLEFDPARLDFVEERLNEIQLLKRKYGESV
EDILEYAASIEDEVDELLNREDRVEELQADLKGIKADLTVEAHNLTGLRKKVASELVGSIHHELRDLYMEKTEFAIHFNE
RDESKKDFFHRSGQDDIDFMISTNPGEPLKELSKTASGGELSRIMLALKSIFSKHQGITSIIFDEVDTGVSGRVAQAMAE
KIQRLSAGSQVLVITHLPQVAAMADHHLYISKEETGEGRTKTSVGNLSTNEQIEELGRMIAGAEMTELTKKHAKELLYQA
NQIKS

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=405551 GNK04_RS14300 WP_159783051.1 2748057..2749754(-) (recN) [Bacillus sp. N1-1]
ATGTTAGCGGAACTATCCATTCGTAATTTTGCGATCATAGAAGCGATTACCGTTTCATTTGAGCGTGGGTTAACCGTTCT
TACTGGAGAAACAGGTGCTGGTAAATCCATCATTATTGATGCCATAGGGCTATTAGTTGGTGGGAGAGGTTCAGCTGAAT
TCGTTCGTTATGGAACGAAAAAAGCAGAAATTGAAGGATTATTTCATATTGATACAAACCATCCAACGGTGCAAAAACTT
GAAGATGTAGGAATCGAGTTTACAGATGGCATGGTGGTACTGCGCCGTGATATTTCACATACAGGTAAAAGCATCTGCCG
AGTTAATGGAAAGTTAGTGACGCTTGGAATTTTGCGAGAGATTGGTCAAACACTTATTGACATTCATGGGCAGCATGAAC
ATCAGGATTTAATGCAATCTGATAAGCATCTTACTTTGCTCGATCAGTTTGGGGAACGATCAATTGGTCCAGCTCTTTTT
GAATACAGGGAAATCTTTCAAAGATACAAAAAAATCCAGCAACAAATGAAAAATTTAACTGAGAATGAACAACAGATGGC
TCATAGACTGGATTTAATTCAATATCAACTTGAAGAAATCACGAAAGCTGAGCTTTCTCCTAATGAAGATGATCAGTTAA
TGGACGAGAAATTACGATTAGGCAATTTTGAAAAACTATATACGGCTCTTCAGGATGTTTATGATTCCCTACATGGAGAT
AATAAAGGACTAGACTGGGTAGGACTTGCGATGTCACAACTGGAGTCGGTTGCGGACCTTGATGAAGAACTGCAGGGATA
TCATGAAGAAGTAGCCAATCAATTTTATCTGCTTGAAGAAACGGCAGGTAAATTAAATACATATCGTGATCAACTTGAAT
TTGATCCCGCACGATTGGATTTTGTAGAAGAACGACTAAACGAAATTCAACTATTAAAGCGAAAGTATGGAGAATCTGTA
GAAGACATATTGGAGTATGCAGCTTCGATTGAAGATGAAGTAGATGAGTTATTAAACAGAGAAGATCGCGTAGAAGAGCT
ACAGGCCGACTTAAAGGGCATAAAAGCTGATTTAACGGTAGAGGCTCATAATTTGACCGGACTTCGAAAAAAAGTTGCTA
GTGAGCTTGTTGGATCAATTCACCATGAGCTTAGAGATCTTTATATGGAGAAAACAGAATTCGCAATTCATTTTAATGAA
CGTGATGAAAGTAAGAAAGACTTTTTCCATCGATCCGGACAAGATGATATTGATTTTATGATCTCTACCAATCCGGGCGA
GCCGCTTAAGGAGCTTTCTAAAACGGCTTCTGGTGGTGAGCTATCTCGTATCATGTTAGCGTTGAAGTCCATCTTCTCGA
AACATCAAGGCATTACATCAATCATATTTGACGAAGTAGATACTGGTGTAAGTGGAAGGGTTGCCCAAGCGATGGCTGAG
AAGATACAGCGTCTTTCCGCCGGGTCCCAAGTACTTGTTATTACTCACCTTCCTCAAGTTGCAGCGATGGCCGATCATCA
CCTTTATATTTCAAAAGAAGAAACGGGTGAAGGTCGAACAAAGACAAGTGTTGGAAATTTAAGTACAAATGAACAAATAG
AAGAACTTGGAAGAATGATTGCTGGCGCCGAGATGACGGAGCTTACAAAGAAACATGCAAAAGAATTGTTATATCAAGCA
AACCAAATTAAATCATGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z2QCF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

58.435

100

0.595

Multiple sequence alignment