Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   HXS80_RS25805 Genome accession   NZ_CP058556
Coordinates   5983237..5984328 (+) Length   363 a.a.
NCBI ID   WP_030731632.1    Uniprot ID   -
Organism   Streptomyces sp. CB04723     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 5978237..5989328
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS80_RS25790 (HXS80_25790) - 5978249..5979607 (+) 1359 WP_179183259.1 deoxyguanosinetriphosphate triphosphohydrolase -
  HXS80_RS25795 (HXS80_25795) - 5979746..5981005 (+) 1260 WP_179183260.1 NAD(P)/FAD-dependent oxidoreductase -
  HXS80_RS25800 (HXS80_25800) dnaG 5981100..5983028 (+) 1929 WP_179183261.1 DNA primase -
  HXS80_RS25805 (HXS80_25805) rpoS 5983237..5984328 (+) 1092 WP_030731632.1 RNA polymerase sigma factor Regulator
  HXS80_RS25810 (HXS80_25810) rcrQ 5984350..5986278 (-) 1929 WP_030120146.1 ABC transporter ATP-binding protein Regulator
  HXS80_RS25815 (HXS80_25815) rcrP 5986278..5988011 (-) 1734 WP_179183262.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 363 a.a.        Molecular weight: 40538.13 Da        Isoelectric Point: 5.9278

>NTDB_id=405539 HXS80_RS25805 WP_030731632.1 5983237..5984328(+) (rpoS) [Streptomyces sp. CB04723]
MQTRTVTSTTEPIAAIPAQHRALHHPETTTGPPGTAPEAVMVEATHLPDPPDPRGRADSGGPTSDLFRQYLREIGRIPLL
TAAEEVELARRVEAGLFAEERLAGTPDLDSRLAGDLDRLVVLGRTAKRRLIEANLRLVVSVAKRYVGRGLTMLDLVQEGN
LGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQRRLLQERGVEPTAEDIAAELDL
TPERVTEVLRLAQEPVSLHAPVGEEDDVSFGDLIEDGDAPSPVESAAFLLLREHLEAVLSTLGERERKVVQLRYGLDDGR
PRTLEEIGRIFGVTRERIRQIESKTLTRLRDHAFADQLRGYLD

Nucleotide


Download         Length: 1092 bp        

>NTDB_id=405539 HXS80_RS25805 WP_030731632.1 5983237..5984328(+) (rpoS) [Streptomyces sp. CB04723]
GTGCAGACCCGGACCGTGACGTCCACGACCGAGCCCATCGCGGCCATCCCGGCGCAGCACAGGGCCCTGCACCACCCGGA
GACCACCACCGGCCCGCCCGGAACCGCCCCCGAGGCAGTCATGGTCGAAGCGACGCACCTCCCCGACCCCCCGGACCCCC
GCGGCCGCGCGGACTCCGGCGGCCCCACCTCCGACCTGTTCCGGCAGTACCTGCGCGAGATCGGCCGCATCCCGCTGCTC
ACCGCCGCCGAGGAGGTCGAGCTGGCCCGCCGCGTCGAGGCCGGGCTCTTCGCCGAGGAACGCCTCGCGGGCACCCCCGA
CCTCGACTCCCGCCTCGCCGGCGACCTGGACCGGCTCGTCGTCCTGGGCCGCACCGCCAAACGACGGCTCATCGAGGCCA
ACCTCCGCCTCGTCGTCTCCGTCGCCAAACGCTACGTGGGACGCGGGCTGACCATGCTCGACCTGGTCCAGGAGGGGAAC
CTCGGCCTCATCCGGGCCGTCGAGAAGTTCGACTACGCCCGGGGCTACAAGTTCTCCACGTACGCGACCTGGTGGATCCG
CCAGGCCATGTCCCGCGCCCTCGCCGACCAGGCCCGCACCATCCGCGTCCCCGTCCACGTCGTGGAGCTGATCAACCGCG
TCGTACGCGTCCAGCGCCGGCTCCTCCAGGAACGCGGCGTCGAGCCGACCGCCGAGGACATCGCCGCCGAGCTGGACCTG
ACGCCCGAGCGGGTCACCGAGGTCCTGCGCCTGGCCCAGGAGCCGGTCTCCCTGCACGCCCCCGTCGGCGAGGAGGACGA
CGTCTCCTTCGGCGACCTCATCGAGGACGGCGACGCCCCCTCGCCCGTCGAGTCCGCCGCCTTCCTGCTGCTGCGCGAAC
ACCTGGAGGCGGTGCTCTCCACCCTCGGCGAACGCGAACGCAAGGTGGTCCAGCTGCGCTACGGCCTGGACGACGGGCGG
CCCCGCACCCTGGAGGAGATAGGCCGGATCTTCGGCGTGACACGCGAACGCATCCGCCAGATCGAGTCCAAGACCCTCAC
CAGGCTGCGGGACCACGCCTTCGCCGACCAACTCCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(130-199)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(65-98)

Sigma-70, region 4 (Sigma70_r4)

(298-350)

Sigma-70 region 3 (Sigma70_r3)

(209-285)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.499

95.592

0.397

Multiple sequence alignment