Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HXS80_RS25815 Genome accession   NZ_CP058556
Coordinates   5986278..5988011 (-) Length   577 a.a.
NCBI ID   WP_179183262.1    Uniprot ID   -
Organism   Streptomyces sp. CB04723     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5981278..5993011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS80_RS25805 (HXS80_25805) rpoS 5983237..5984328 (+) 1092 WP_030731632.1 RNA polymerase sigma factor Regulator
  HXS80_RS25810 (HXS80_25810) rcrQ 5984350..5986278 (-) 1929 WP_030120146.1 ABC transporter ATP-binding protein Regulator
  HXS80_RS25815 (HXS80_25815) rcrP 5986278..5988011 (-) 1734 WP_179183262.1 ABC transporter ATP-binding protein Regulator
  HXS80_RS25820 (HXS80_25820) - 5988313..5989764 (-) 1452 WP_179183263.1 FGGY family carbohydrate kinase -
  HXS80_RS25825 (HXS80_25825) - 5989823..5990128 (-) 306 WP_030118269.1 hypothetical protein -
  HXS80_RS25845 (HXS80_25845) - 5991115..5991348 (+) 234 WP_179183264.1 type II toxin-antitoxin system VapB family antitoxin -
  HXS80_RS25850 (HXS80_25850) - 5991345..5991752 (+) 408 WP_179183265.1 PIN domain-containing protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62353.47 Da        Isoelectric Point: 5.7241

>NTDB_id=405541 HXS80_RS25815 WP_179183262.1 5986278..5988011(-) (rcrP) [Streptomyces sp. CB04723]
MLIKLLRVHLAPYKKPIALLVLLQLLQTCATLYLPSLNADIIDNGVVTGDSGYILEFGGLMIAVSVLQILCNIGAVFYGA
RTASALGRDVRAAVFDRVQSFSARELGRFGAPSLITRTTNDVQQIQMLVLLAFTLMVSAPIMCVGGIIMALGQDVPLSAV
LLAVVPVLGVSVGLIVKRMRPLFRTMQERLDGVNRVLREQITGNRVIRAFVRDGYEEKRFRGANTELTDVSVATGRLMAL
MFPTVMTVVNVSSVAVVWFGAHRIDSGGMQIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERVEEVLGTESSVVP
PLAPVTELRRHGHLEVRGAEFRYPGAEEPVLRNVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDVTDGAVLVDGEDVR
TLDPALLARTVSLVPQKPYLFSGTVATNLRYGNPDATNEELWHALEVAQAKEFVEALEHGLDAPIAQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALGRETAGATVVIVAQRVSTIRDADRILVLDEGRVVGSGTHHELMDGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=405541 HXS80_RS25815 WP_179183262.1 5986278..5988011(-) (rcrP) [Streptomyces sp. CB04723]
GTGCTCATAAAACTCCTGCGGGTCCATCTGGCCCCGTACAAGAAACCCATCGCGCTGCTGGTGCTGCTCCAGCTGCTGCA
GACCTGCGCCACCCTCTATCTGCCCAGCCTGAACGCCGACATCATCGACAACGGTGTCGTCACGGGTGACTCCGGCTACA
TCCTGGAGTTCGGCGGCCTCATGATCGCCGTCAGCGTGCTCCAGATCCTCTGCAACATCGGGGCCGTGTTCTACGGCGCC
CGTACGGCCTCCGCGCTCGGGCGCGACGTGCGGGCCGCCGTCTTCGACCGGGTGCAGTCCTTCTCCGCCCGGGAGCTGGG
GCGGTTCGGGGCCCCCTCGCTGATCACCCGGACCACCAACGACGTCCAGCAGATCCAGATGCTGGTGCTGCTGGCGTTCA
CCCTGATGGTGTCGGCCCCGATCATGTGCGTCGGCGGCATCATCATGGCGCTCGGGCAGGACGTGCCGCTCTCCGCGGTG
CTGCTGGCGGTCGTGCCGGTGCTGGGCGTCTCGGTCGGGCTGATCGTGAAGAGGATGCGGCCGCTGTTCCGCACCATGCA
GGAGCGGCTGGACGGGGTGAACCGGGTGCTGCGCGAGCAGATTACCGGCAACCGGGTCATCCGGGCCTTCGTCCGGGACG
GGTACGAGGAGAAGCGGTTCCGGGGCGCGAACACCGAGCTGACCGACGTGTCGGTGGCGACCGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTCAACGTGTCGTCGGTCGCGGTGGTGTGGTTCGGCGCCCACCGCATCGACAGCGG
CGGGATGCAGATCGGCGCGCTGACCGCTTTCCTCGCCTATCTGATGCAGATCGTGATGGCGGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTGTGCGCCGAGCGCGTCGAGGAGGTCCTGGGGACCGAGTCGAGCGTCGTGCCG
CCGCTCGCGCCCGTCACCGAACTGCGGCGCCACGGGCATCTGGAGGTGCGCGGGGCGGAGTTCCGCTATCCGGGTGCGGA
GGAGCCGGTGCTGCGGAACGTGGACCTGGTGGCCCGGCCCGGAGAGACGACCGCGGTCATCGGGTCGACGGGCAGCGGGA
AGTCCACGCTGCTCGGGCTCGTACCGCGGCTGTTCGACGTGACGGACGGCGCGGTGCTGGTCGACGGCGAGGACGTGCGG
ACGCTCGATCCGGCGCTGCTGGCGAGGACGGTGTCGCTGGTGCCGCAGAAGCCGTACCTGTTCTCGGGGACGGTGGCGAC
GAATCTGCGGTACGGGAACCCGGACGCCACCAACGAGGAGCTGTGGCACGCGCTGGAGGTGGCGCAGGCGAAGGAGTTCG
TCGAGGCGCTGGAGCACGGGCTGGACGCGCCGATCGCGCAGGGCGGCACCAATGTCTCCGGCGGTCAGCGGCAGCGGCTC
GCGATCGCGCGGACGCTGGTGCAGCGGCCGGAGATCTATCTGTTCGACGACTCGTTCTCGGCGCTGGACTACGCGACCGA
CGCGGCGCTGCGGGCGGCACTGGGCCGGGAGACGGCCGGGGCGACCGTGGTGATCGTGGCGCAGCGGGTGTCCACCATCC
GCGACGCGGACCGGATCCTGGTGCTGGACGAGGGCCGGGTCGTGGGGTCCGGGACCCATCACGAGCTGATGGACGGCAAT
GAAACGTACCGGGAGATCGTGCTCTCCCAGCTGACGGAAGCGGAGGCCGCGTAA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(18-288)

ABC transporter (ABC_tran)

(351-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.451

100

0.399