Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HXS80_RS25810 Genome accession   NZ_CP058556
Coordinates   5984350..5986278 (-) Length   642 a.a.
NCBI ID   WP_030120146.1    Uniprot ID   A0ABD7CZY7
Organism   Streptomyces sp. CB04723     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 5979350..5991278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXS80_RS25795 (HXS80_25795) - 5979746..5981005 (+) 1260 WP_179183260.1 NAD(P)/FAD-dependent oxidoreductase -
  HXS80_RS25800 (HXS80_25800) dnaG 5981100..5983028 (+) 1929 WP_179183261.1 DNA primase -
  HXS80_RS25805 (HXS80_25805) rpoS 5983237..5984328 (+) 1092 WP_030731632.1 RNA polymerase sigma factor Regulator
  HXS80_RS25810 (HXS80_25810) rcrQ 5984350..5986278 (-) 1929 WP_030120146.1 ABC transporter ATP-binding protein Regulator
  HXS80_RS25815 (HXS80_25815) rcrP 5986278..5988011 (-) 1734 WP_179183262.1 ABC transporter ATP-binding protein Regulator
  HXS80_RS25820 (HXS80_25820) - 5988313..5989764 (-) 1452 WP_179183263.1 FGGY family carbohydrate kinase -
  HXS80_RS25825 (HXS80_25825) - 5989823..5990128 (-) 306 WP_030118269.1 hypothetical protein -

Sequence

Protein


Download         Length: 642 a.a.        Molecular weight: 68989.41 Da        Isoelectric Point: 5.1194

>NTDB_id=405540 HXS80_RS25810 WP_030120146.1 5984350..5986278(-) (rcrQ) [Streptomyces sp. CB04723]
MAGPGGRMMAGGAPTDRSMDFKGSGKRLLKRFGQEKASLYLMLAAVAVSVALSVAGPKILGMATDLIFAGVVGRGMPDGT
TKAQAIEALRADGRGSMADMLSGVDFTPGEGIDFGAVGNVLLVALAIYVGAGLLMLVATRVSIRVINRIVFQLREDLQTK
LARLPLSYFDRAKRGEVLSRATNDIDNISQTLQQTMGQLINSVLTIVGVLVMMFWISPLLALVALVTVPLSVVVATQVGK
RSQPQFVRQWRVTGTLNAHIEEMYTGHTLVKVFGRQEESARDFAEQNEALYEAGFKAQFASGLMQPLMFFISNINYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQVASMANLIQSGIASAERVFELLDAEEQEADPEHGERPEALQGRVSLE
KVSFRYEPDKPLIEGLSLSVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDVARMSRAELRSSIGMVLQDT
WLFGGTIAENIAYGASREVTRQEIEEAAKAAHADRFIRTLPDGYDSVIDDEGTGVSAGEKQLITIARAFLSDPVILVLDE
ATSSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGTHEQLLAAGGAYARLYAAQFAEALAE
VD

Nucleotide


Download         Length: 1929 bp        

>NTDB_id=405540 HXS80_RS25810 WP_030120146.1 5984350..5986278(-) (rcrQ) [Streptomyces sp. CB04723]
ATGGCCGGTCCGGGCGGACGGATGATGGCCGGGGGCGCGCCCACCGACCGGTCGATGGACTTCAAGGGGTCGGGCAAGCG
GCTGCTCAAGCGGTTCGGGCAGGAGAAGGCGTCGCTGTACCTGATGCTGGCCGCGGTGGCGGTGAGCGTGGCGCTGTCGG
TGGCCGGGCCGAAGATCCTCGGCATGGCGACCGACCTGATCTTCGCCGGTGTCGTGGGGCGCGGGATGCCCGACGGGACG
ACGAAGGCGCAGGCGATCGAGGCGCTGCGAGCGGACGGCCGGGGGTCGATGGCCGACATGCTCTCGGGCGTGGACTTCAC
CCCGGGCGAGGGCATCGACTTCGGGGCGGTGGGGAACGTCCTGCTGGTGGCCCTGGCGATCTACGTCGGGGCCGGGCTGC
TGATGCTGGTGGCGACGCGGGTGTCGATCCGGGTGATCAACCGGATCGTGTTCCAGCTGCGGGAGGACCTCCAGACGAAG
CTGGCGCGGCTGCCGCTGTCGTACTTCGACCGGGCCAAGCGCGGTGAGGTGCTGAGCCGGGCGACGAACGACATCGACAA
CATCTCGCAGACGCTCCAGCAGACGATGGGCCAGCTCATCAACTCGGTGCTGACGATCGTCGGCGTGCTGGTGATGATGT
TCTGGATCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTCCCGCTGTCGGTGGTCGTGGCGACGCAGGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTGCGGCAGTGGCGGGTGACGGGCACGCTCAACGCCCATATCGAGGAGATGTACACCGGGCA
CACCCTGGTGAAGGTCTTCGGCCGGCAGGAGGAGTCCGCGCGGGACTTCGCCGAGCAGAACGAGGCGCTGTACGAGGCGG
GGTTCAAGGCCCAGTTCGCCAGCGGTCTGATGCAGCCGCTGATGTTCTTCATCTCCAACATCAACTACGTGCTGGTCGCG
GTGGTCGGCGGGCTCCGGGTCGCTTCGGGCGCGCTGTCGATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCCAACCTGATCCAGTCCGGCATCGCGTCGGCGGAGCGGGTCTTCGAGC
TGCTGGACGCCGAGGAGCAGGAGGCGGACCCGGAGCACGGGGAGCGGCCGGAGGCGCTTCAGGGCCGGGTCTCGCTGGAG
AAGGTGTCGTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGGGCCTGTCGCTGAGCGTGGAGCCGGGGCAGACCGTCGC
GATCGTCGGCCCGACCGGTGCGGGCAAGACGACGCTGGTCAATCTGCTGATGCGGTTCTACGAGGTGACCGGCGGGCGGA
TCGCGCTCGACGGGGTGGATGTGGCGCGGATGTCGCGGGCCGAACTGCGGTCCTCGATCGGCATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACGATCGCGGAGAACATCGCGTACGGCGCTTCGCGCGAGGTCACCCGGCAGGAGATCGAGGAGGC
GGCGAAGGCGGCGCACGCGGACCGGTTCATCCGGACGCTGCCCGACGGGTACGACTCGGTGATCGACGACGAGGGCACCG
GTGTCAGCGCGGGCGAGAAGCAGCTGATCACGATCGCGCGGGCGTTCCTGTCCGATCCGGTGATCCTGGTGCTCGACGAG
GCGACCAGCTCGGTGGACACCCGGACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTGGCGCACGGGCGTACGTCGTT
CGTGATCGCGCACCGGCTCTCCACGATCCGGGACGCGGACGTGATCCTGGTGATGGAGAACGGGTCGATCGTGGAACAGG
GCACGCACGAGCAGCTGTTGGCGGCGGGCGGCGCCTACGCCCGGTTGTACGCGGCGCAGTTCGCGGAGGCGCTGGCCGAG
GTGGATTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-563)

ABC transporter transmembrane region (ABC_membrane)

(58-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0ABD7CZY7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

44.318

82.243

0.364

Multiple sequence alignment