Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   GOQ08_RS01645 Genome accession   NZ_CP046549
Coordinates   345171..346172 (+) Length   333 a.a.
NCBI ID   WP_163063057.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 19WIARLN022_full     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 340171..351172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ08_RS01615 (GOQ08_01615) - 341752..341881 (-) 130 Protein_308 hypothetical protein -
  GOQ08_RS01620 (GOQ08_01620) rpoZ 341920..342198 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GOQ08_RS01625 (GOQ08_01625) gmk 342271..342900 (-) 630 WP_000015937.1 guanylate kinase -
  GOQ08_RS01630 (GOQ08_01630) ispH 343023..343973 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GOQ08_RS01635 (GOQ08_01635) fimU 344143..344616 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GOQ08_RS01640 (GOQ08_01640) pilV 344610..345170 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  GOQ08_RS01645 (GOQ08_01645) pilW 345171..346172 (+) 1002 WP_163063057.1 PilW family protein Machinery gene
  GOQ08_RS01650 (GOQ08_01650) pilX 346169..346987 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GOQ08_RS01655 (GOQ08_01655) pilY1 346999..350853 (+) 3855 WP_216074186.1 PilC/PilY family type IV pilus protein Machinery gene

Sequence

Protein


Download         Length: 333 a.a.        Molecular weight: 35887.57 Da        Isoelectric Point: 5.3062

>NTDB_id=405344 GOQ08_RS01645 WP_163063057.1 345171..346172(+) (pilW) [Acinetobacter baumannii strain 19WIARLN022_full]
MAQSFISNKEQGFTLIELIVALALGLILVAAATQLFIGGLLSSRLQKANAEIQDSGIFGLEYMARDIRLLNYGNVVNPQL
TDTTPWGGIVLTGSTATNANNINFIPKVDTNTYIPEALLSRGAGDTVSTVNNYWKGLSNIQNSSNAEVQSDQLTIQFIAP
TNMTNCEGVNVLAGDLIVQRYFLRVDNNGSSQQDYALACDANTPEVSATAQPDIVNGLGDAGQIILPRIDHFHVLLGAKN
AAGNFAYYTIPQYRVAAQAARDASPAVAAPRILSIQISVLARSTNNAQNKAIDPNQSFLMLDQNVHAADNRTRFLRRVYS
VTIALRNAMGETI

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=405344 GOQ08_RS01645 WP_163063057.1 345171..346172(+) (pilW) [Acinetobacter baumannii strain 19WIARLN022_full]
ATGGCTCAATCATTTATTTCTAATAAAGAACAAGGTTTTACCTTGATTGAACTTATAGTCGCCTTAGCTTTAGGCCTAAT
ATTAGTGGCTGCTGCAACACAGCTATTTATTGGAGGGCTTTTATCGAGCCGATTGCAAAAGGCCAATGCTGAAATCCAGG
ACAGCGGTATTTTTGGTTTGGAATATATGGCACGTGATATACGGCTTCTAAATTATGGAAATGTTGTAAATCCACAATTA
ACAGATACAACGCCTTGGGGAGGTATTGTATTAACAGGTTCAACAGCAACAAATGCCAACAATATTAATTTTATTCCAAA
AGTTGATACAAATACTTATATTCCGGAAGCGTTATTAAGCCGTGGTGCAGGTGATACGGTAAGTACAGTGAATAACTACT
GGAAAGGTCTTTCAAATATACAGAATAGTTCAAATGCTGAAGTACAAAGCGATCAACTGACTATTCAATTCATTGCCCCG
ACCAATATGACTAATTGTGAAGGTGTGAATGTGTTAGCGGGGGACCTAATAGTTCAACGGTATTTTTTACGTGTTGATAA
TAATGGTAGCTCTCAACAGGATTATGCACTTGCATGTGATGCGAATACCCCTGAGGTTAGTGCTACAGCGCAACCTGATA
TCGTTAATGGATTAGGAGATGCAGGCCAAATTATACTGCCTCGTATTGACCATTTTCATGTCTTATTAGGTGCGAAAAAC
GCAGCTGGTAATTTTGCTTATTACACAATTCCTCAGTATCGGGTGGCTGCACAAGCTGCTCGAGATGCGAGTCCAGCTGT
GGCTGCTCCAAGAATTCTGTCAATACAAATATCGGTATTAGCCCGTTCTACAAATAATGCTCAAAATAAGGCAATAGACC
CTAATCAGTCTTTTCTTATGCTAGATCAGAATGTGCATGCTGCCGATAACAGAACTCGCTTTTTGCGACGCGTATATAGC
GTGACAATTGCTTTACGCAATGCAATGGGGGAAACAATATGA

Domains

Predicted by InterproScan.

Type IV Pilus-assembly protein W (PilW)

(181-327)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

99.399

100

0.994

Multiple sequence alignment