Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   HXT67_RS22245 Genome accession   NZ_CP058354
Coordinates   4894658..4896766 (+) Length   702 a.a.
NCBI ID   WP_014495169.1    Uniprot ID   -
Organism   Bradyrhizobium japonicum strain 5038     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4889658..4901766
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HXT67_RS22235 mfd 4890666..4894184 (-) 3519 WP_014495171.1 transcription-repair coupling factor -
  HXT67_RS22240 - 4894181..4894471 (-) 291 WP_014495170.1 succinate dehydrogenase assembly factor 2 -
  HXT67_RS22245 recG 4894658..4896766 (+) 2109 WP_014495169.1 ATP-dependent DNA helicase RecG Machinery gene
  HXT67_RS22250 panE 4896763..4897692 (-) 930 WP_014495168.1 2-dehydropantoate 2-reductase -
  HXT67_RS22255 - 4897894..4898724 (-) 831 WP_014495167.1 helix-turn-helix transcriptional regulator -
  HXT67_RS22260 - 4898821..4899210 (-) 390 WP_014495166.1 hypothetical protein -
  HXT67_RS22265 - 4899386..4899907 (+) 522 WP_014495165.1 adenylate kinase -
  HXT67_RS22270 - 4899936..4900793 (-) 858 WP_014495164.1 NAD(P)-dependent oxidoreductase -
  HXT67_RS22275 - 4900899..4901669 (-) 771 WP_014495163.1 DUF502 domain-containing protein -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 77107.34 Da        Isoelectric Point: 8.6713

>NTDB_id=405342 HXT67_RS22245 WP_014495169.1 4894658..4896766(+) (recG) [Bradyrhizobium japonicum strain 5038]
MRPSLLNPLFAPVTSLPGVGPKQDKLLQYLLSRNETPRLVDLLLHLPSQVIDRRARPKIRDAVQGTMVTLEVTIDRHRPP
PPRNARAPYLVYASDDTGDVVLTFFRAKPGYVEKLLPVGEKRYVSGTLQMYDGIPQIVHPDRVLDEEAIAKLSGIDPVYP
LTTGLALGSLRRAVAQALQKLPALPEWISPEVMRRCSFPTVTEALSRVHQPVELTDILPEKPYWSRLAFDELLAGQLALA
LIRAQLRRPAGVRNAGDGHLRNKIIDALPYALTPSQRNAAAAIAEDLKQPVRMLRLLQGDVGSGKTVVALLAAAAVAEVG
KQAALMAPTEILARQHIKTIAPLAERAGLRVAILTGREKGKERRELLAQLEAGEINLLVGTHALIQDDVIFNDLALAVVD
EQHRFGVRERLALTSKGAAVDVLVLSATPIPRTLVLTYFGDMDISELREKPAGRQPIETRTISMSRLDEVTDSIGRALQA
GKLVYWICPLVEESEAEGTEHLTNATKRFESLQKRFGDRVGLVHGQMKGTEKDRVMGQFAAHEIGLLVATTVVEVGVDVP
AATIMVIENAERFGLAQLHQLRGRIGRGSEASTCLLLYSEPLGEMSKARLKVIRETTDGFRIAEEDLKLRGEGDVLGVRQ
SGLPGYRIARSEVHGQLITQARDEALRILKDDPKLKGERGEALRCLLYLYERDEAIPLIGAG

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=405342 HXT67_RS22245 WP_014495169.1 4894658..4896766(+) (recG) [Bradyrhizobium japonicum strain 5038]
ATGCGCCCCAGCCTGCTCAATCCGCTGTTTGCTCCCGTGACCAGCCTGCCCGGCGTCGGCCCGAAGCAGGACAAGCTGCT
GCAGTACCTGCTCAGCCGCAATGAGACGCCGCGCCTGGTTGACCTGCTGCTGCATTTGCCGAGCCAGGTCATCGACCGCC
GCGCGCGGCCAAAGATCCGCGACGCGGTCCAGGGAACCATGGTGACGCTGGAGGTCACCATCGATCGCCATCGCCCGCCT
CCGCCGCGCAACGCTCGCGCGCCCTATCTCGTCTACGCAAGCGACGACACCGGCGACGTCGTGCTGACCTTCTTCCGCGC
CAAGCCCGGCTACGTCGAAAAACTGCTGCCTGTTGGCGAGAAGCGCTACGTCTCGGGCACGCTCCAGATGTATGACGGCA
TCCCGCAGATCGTGCATCCCGACCGCGTGCTCGACGAGGAGGCGATCGCAAAACTCTCCGGCATCGACCCGGTCTATCCG
CTGACCACGGGTCTGGCGCTCGGCTCGCTGCGACGCGCGGTCGCCCAAGCGCTGCAGAAGCTGCCCGCTTTGCCGGAATG
GATCAGCCCGGAGGTGATGCGCCGCTGCAGTTTTCCGACGGTCACCGAGGCGCTCAGCCGCGTGCATCAACCGGTCGAGC
TCACCGACATCCTACCCGAAAAGCCCTACTGGTCGCGCCTCGCCTTCGACGAGCTGTTGGCCGGCCAGCTCGCGCTGGCC
CTGATCCGCGCGCAATTGCGCCGTCCCGCCGGCGTCCGCAATGCCGGCGACGGCCACTTGCGCAACAAGATCATCGACGC
CCTGCCCTATGCCCTGACCCCGTCCCAGCGCAACGCCGCGGCCGCCATCGCCGAGGATCTGAAACAGCCCGTGCGCATGC
TGCGCCTGCTTCAGGGCGATGTCGGCTCGGGCAAGACCGTCGTGGCGCTGCTGGCGGCCGCCGCCGTCGCCGAAGTCGGC
AAGCAAGCCGCGCTGATGGCGCCGACGGAAATCTTGGCGCGGCAGCACATCAAGACCATCGCCCCGCTCGCGGAGCGCGC
AGGGCTGCGCGTGGCCATCCTCACCGGCCGCGAGAAGGGCAAGGAGCGGCGCGAGCTGTTGGCGCAACTCGAAGCCGGCG
AGATCAATCTCCTCGTCGGCACCCACGCGCTGATCCAGGACGACGTGATCTTCAACGATCTCGCCCTGGCCGTCGTCGAC
GAGCAGCATCGTTTCGGCGTGCGCGAACGCCTCGCGCTGACCTCGAAGGGCGCCGCCGTCGACGTGCTGGTGCTGAGCGC
GACGCCGATCCCGCGCACGCTGGTGCTGACCTATTTCGGCGACATGGACATCAGCGAGCTCCGCGAAAAGCCCGCCGGCC
GCCAGCCGATCGAGACCCGCACCATCTCGATGAGCCGCCTCGACGAGGTCACCGATAGCATCGGCCGCGCGTTGCAGGCG
GGCAAGCTGGTCTACTGGATCTGCCCGCTGGTCGAGGAATCCGAGGCCGAAGGCACCGAGCACCTGACCAATGCGACCAA
GCGCTTCGAGAGCCTGCAAAAGCGCTTCGGCGACCGCGTCGGCCTCGTCCACGGCCAGATGAAGGGCACCGAGAAGGACC
GCGTGATGGGCCAGTTCGCAGCCCACGAGATCGGCCTTCTGGTTGCGACCACCGTTGTCGAGGTCGGCGTCGACGTGCCG
GCCGCGACCATCATGGTGATCGAGAACGCCGAACGGTTTGGCTTGGCCCAGCTGCACCAGCTGCGCGGCCGCATCGGGCG
CGGCTCGGAAGCCTCGACCTGCCTCCTTCTCTACTCGGAGCCGCTCGGCGAAATGTCCAAGGCACGGCTGAAGGTCATCC
GCGAGACCACCGACGGCTTCCGCATCGCCGAGGAGGATTTGAAGCTGCGCGGCGAAGGCGACGTGCTGGGCGTCCGCCAG
AGCGGCTTGCCCGGCTACCGCATCGCGCGGTCGGAGGTGCACGGCCAGCTCATCACCCAGGCCAGAGACGAGGCGCTGCG
GATCCTGAAGGACGATCCGAAGCTGAAGGGCGAGCGCGGCGAGGCGCTGCGGTGCCTGCTGTATCTCTATGAGCGGGACG
AAGCGATCCCGCTGATCGGGGCAGGTTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(18-178)

DEAD/DEAH box helicase (DEAD)

(296-430)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-677)

Helicase conserved C-terminal domain (Helicase_C)

(501-588)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

43.011

92.735

0.399
  recG Bacillus subtilis subsp. subtilis str. 168

39.169

96.011

0.376
  recG/mmsA Streptococcus pneumoniae R6

39.144

93.162

0.365
  recG/mmsA Streptococcus pneumoniae R36A

39.144

93.162

0.365

Multiple sequence alignment