Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   GOQ08_RS01650 Genome accession   NZ_CP046549
Coordinates   346169..346987 (+) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain 19WIARLN022_full     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 341169..351987
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ08_RS01615 (GOQ08_01615) - 341752..341881 (-) 130 Protein_308 hypothetical protein -
  GOQ08_RS01620 (GOQ08_01620) rpoZ 341920..342198 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  GOQ08_RS01625 (GOQ08_01625) gmk 342271..342900 (-) 630 WP_000015937.1 guanylate kinase -
  GOQ08_RS01630 (GOQ08_01630) ispH 343023..343973 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  GOQ08_RS01635 (GOQ08_01635) fimU 344143..344616 (+) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GOQ08_RS01640 (GOQ08_01640) pilV 344610..345170 (+) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  GOQ08_RS01645 (GOQ08_01645) pilW 345171..346172 (+) 1002 WP_163063057.1 PilW family protein Machinery gene
  GOQ08_RS01650 (GOQ08_01650) pilX 346169..346987 (+) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GOQ08_RS01655 (GOQ08_01655) pilY1 346999..350853 (+) 3855 WP_216074186.1 PilC/PilY family type IV pilus protein Machinery gene
  GOQ08_RS01660 (GOQ08_01660) pilY2 350864..351346 (+) 483 WP_163063059.1 type IV pilin protein Machinery gene
  GOQ08_RS01665 (GOQ08_01665) pilE 351343..351768 (+) 426 WP_000788342.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=405345 GOQ08_RS01650 WP_000149374.1 346169..346987(+) (pilX) [Acinetobacter baumannii strain 19WIARLN022_full]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=405345 GOQ08_RS01650 WP_000149374.1 346169..346987(+) (pilX) [Acinetobacter baumannii strain 19WIARLN022_full]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment