Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   GOQ06_RS06570 Genome accession   NZ_CP046546
Coordinates   1369716..1370423 (-) Length   235 a.a.
NCBI ID   WP_000203215.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 19WIARLN023_full     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1364716..1375423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOQ06_RS06550 (GOQ06_06485) - 1365792..1367111 (+) 1320 WP_000517792.1 adenylosuccinate synthase -
  GOQ06_RS06555 (GOQ06_06490) - 1367234..1367551 (+) 318 WP_039099181.1 hypothetical protein -
  GOQ06_RS06560 (GOQ06_06495) - 1367668..1368447 (+) 780 WP_001034598.1 M48 family metallopeptidase -
  GOQ06_RS06565 (GOQ06_06500) - 1368506..1369555 (-) 1050 WP_001159800.1 NADP(H)-dependent aldo-keto reductase -
  GOQ06_RS06570 (GOQ06_06505) crp 1369716..1370423 (-) 708 WP_000203215.1 cAMP-activated global transcriptional regulator CRP Regulator
  GOQ06_RS06575 - 1370665..1370784 (+) 120 Protein_1276 hypothetical protein -
  GOQ06_RS06580 (GOQ06_06510) - 1370863..1371285 (+) 423 WP_001195082.1 OsmC family protein -
  GOQ06_RS06585 (GOQ06_06515) - 1371379..1371804 (+) 426 WP_001026232.1 GNAT family N-acetyltransferase -
  GOQ06_RS06590 (GOQ06_06520) - 1371801..1372607 (-) 807 WP_001237336.1 peptidoglycan DD-metalloendopeptidase family protein -

Sequence

Protein


Download         Length: 235 a.a.        Molecular weight: 26553.16 Da        Isoelectric Point: 4.6625

>NTDB_id=405308 GOQ06_RS06570 WP_000203215.1 1369716..1370423(-) (crp) [Acinetobacter baumannii strain 19WIARLN023_full]
MTSNFSQLSTDALSPGQLPESVKALLKRAHINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNPGDF
FGEMGLFEPNPQRTAEVRTRDVCEIAEISYDNFHELSKQYPDLSYAVFAQLVRRLKNTTRKMTDLAFIDVSGRIARCLID
LSSQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEDQGMIQTDGKAILIFDSSLEETPVTDEDYDDEE

Nucleotide


Download         Length: 708 bp        

>NTDB_id=405308 GOQ06_RS06570 WP_000203215.1 1369716..1370423(-) (crp) [Acinetobacter baumannii strain 19WIARLN023_full]
ATGACTTCAAATTTTTCACAACTCAGCACAGATGCTTTATCTCCGGGGCAACTACCTGAATCCGTTAAAGCATTGTTAAA
ACGTGCTCACATCAACAGATATCCAAAACGAACCACAATTGTTGATGCCGGAACAGAGTCAAAATCTTTATATTTAATTT
TAAAAGGCTCAGTTTCAATTATTTTACGTGAAGACGATGAACGTGAAATTGTTGTGGCATATTTGAATCCTGGTGACTTC
TTTGGGGAAATGGGGCTTTTCGAACCGAACCCTCAACGTACAGCTGAAGTTCGTACCCGTGATGTCTGTGAAATTGCGGA
AATTTCATATGACAACTTCCACGAACTGAGCAAACAGTATCCAGATCTCAGCTATGCCGTTTTCGCGCAACTCGTTCGTC
GTTTAAAAAATACAACTCGTAAAATGACCGATCTTGCATTTATTGATGTGTCAGGTCGTATTGCGCGTTGCTTAATCGAC
CTATCTTCACAACCAGAAGCAATGATCTTGCCGAATGGCCGTCAAATTCGTATTACTCGACAAGAGATTGGACGCATTGT
CGGGTGTTCACGAGAAATGGTTGGCCGTGTATTAAAGACCTTAGAAGATCAAGGTATGATTCAAACTGACGGTAAAGCTA
TTCTAATTTTTGATAGTTCATTAGAAGAAACCCCAGTCACTGACGAAGACTACGATGACGAAGAATAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(152-218)

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

99.149

100

0.991
  crp Vibrio cholerae strain A1552

46.86

88.085

0.413
  crp Haemophilus influenzae Rd KW20

48.205

82.979

0.4

Multiple sequence alignment