Detailed information NTG0405262

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: GOD87_RS18710
• Genome accession: NZ_CP046536
• Coordinates: 290946..291806 (-)
• Length: 286 a.a.
• NCBI ID: WP_001152273.1
• Uniprot ID: A0A836M4G0
• Organism: Acinetobacter baumannii strain XL380
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 285946..296806

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GOD87_RS01370 (GOD87_01370)	-	286837..288147 (+)	1311	WP_086378290.1	tetratricopeptide repeat protein	-
GOD87_RS01375 (GOD87_01375)	-	288224..288550 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
GOD87_RS01380 (GOD87_01380)	rlmB	288652..289401 (+)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
GOD87_RS01385 (GOD87_01385)	-	289437..290351 (+)	915	WP_000075014.1	DMT family transporter	-
GOD87_RS01390 (GOD87_01390)	coaE	290348..290944 (-)	597	WP_023897382.1	dephospho-CoA kinase	-
GOD87_RS18710 (GOD87_01395)	pilD	290946..291806 (-)	861	WP_001152273.1	prepilin peptidase	Machinery gene
GOD87_RS01400 (GOD87_01400)	pilC	291806..293032 (-)	1227	WP_000279218.1	type II secretion system F family protein	Machinery gene
GOD87_RS01405 (GOD87_01405)	pilB	293062..294774 (-)	1713	WP_031959606.1	type IV-A pilus assembly ATPase PilB	Machinery gene
GOD87_RS01410 (GOD87_01410)	tpiA	295065..295859 (+)	795	WP_000016939.1	triose-phosphate isomerase	-
GOD87_RS01415 (GOD87_01415)	secG	295872..296201 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32088.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=405262 GOD87_RS18710 WP_001152273.1 290946..291806(-) (pilD) [Acinetobacter baumannii strain XL380]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHEKLTLSKPASSCPACQQP
IRWYQNIPVISWLMLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=405262 GOD87_RS18710 WP_001152273.1 290946..291806(-) (pilD) [Acinetobacter baumannii strain XL380]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCTGAGCAACCCATTATTGATCATGAGAAGCTAACTTTAAGTAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTATGTTAAGAGGAAAGTGTGGCCATTGCCAGCACCCGATTAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTAGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCACTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

3D structure

• AlphaFold DB: A0A836M4G0

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	98.951	100	0.99
pilD	Acinetobacter nosocomialis M2	98.601	100	0.986
pilD	Vibrio cholerae strain A1552	54.044	95.105	0.514
pilD	Vibrio campbellii strain DS40M4	52.92	95.804	0.507
pilD	Neisseria gonorrhoeae MS11	47.727	92.308	0.441