Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | GJR85_RS00040 | Genome accession | NZ_CP046528 |
| Coordinates | 9286..9810 (+) | Length | 174 a.a. |
| NCBI ID | WP_063507228.1 | Uniprot ID | - |
| Organism | Lactobacillus acetotolerans strain CN247 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4286..14810
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJR85_RS00030 (GJR85_00030) | gyrA | 6224..8737 (+) | 2514 | WP_156661103.1 | DNA gyrase subunit A | - |
| GJR85_RS00035 (GJR85_00035) | rpsF | 8946..9242 (+) | 297 | WP_063507227.1 | 30S ribosomal protein S6 | - |
| GJR85_RS00040 (GJR85_00040) | ssb | 9286..9810 (+) | 525 | WP_063507228.1 | single-stranded DNA-binding protein | Machinery gene |
| GJR85_RS00045 (GJR85_00045) | rpsR | 9840..10079 (+) | 240 | WP_156661105.1 | 30S ribosomal protein S18 | - |
| GJR85_RS00050 (GJR85_00050) | - | 10248..12269 (+) | 2022 | WP_156661106.1 | DHH family phosphoesterase | - |
| GJR85_RS00055 (GJR85_00055) | rplI | 12281..12736 (+) | 456 | WP_060458995.1 | 50S ribosomal protein L9 | - |
| GJR85_RS00060 (GJR85_00060) | dnaB | 12782..14164 (+) | 1383 | WP_156661108.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 174 a.a. Molecular weight: 18884.64 Da Isoelectric Point: 6.3694
>NTDB_id=405119 GJR85_RS00040 WP_063507228.1 9286..9810(+) (ssb) [Lactobacillus acetotolerans strain CN247]
MINRAVLVGRLTRDPELRTTGSGISVATFTLAVDRQYTNAQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKNRESRGQNGDFPPAPNNNGNAGTQSTNNSQTNGTPSSTKKDNNSSKPKDPFAG
SGDTIDISDDDLPF
MINRAVLVGRLTRDPELRTTGSGISVATFTLAVDRQYTNAQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKNRESRGQNGDFPPAPNNNGNAGTQSTNNSQTNGTPSSTKKDNNSSKPKDPFAG
SGDTIDISDDDLPF
Nucleotide
Download Length: 525 bp
>NTDB_id=405119 GJR85_RS00040 WP_063507228.1 9286..9810(+) (ssb) [Lactobacillus acetotolerans strain CN247]
ATGATTAATAGAGCTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTGCGTACTACTGGCAGTGGAATCTCAGTTGC
TACGTTTACTCTCGCTGTTGATCGTCAATATACTAATGCCCAAGGTGAGAGGGGCGCAGACTTTATCAGCTGTGTAATTT
GGAGAAAGGCTGCAGAAAATTTCTGTAACTTTACCTCAAAAGGATCATTGGTTGGTATTGATGGCCGGATTCAAACCAGG
AGTTACGATAATAAAGACGGGCAACGAGTTTATGTCACTGAAGTTGTAGTAGACAACTTCGCATTGCTCGAATCACGTAA
AAATCGTGAATCCCGTGGGCAAAATGGTGATTTTCCACCAGCACCAAATAATAATGGGAATGCTGGCACTCAAAGTACTA
ACAATTCTCAAACTAATGGAACCCCGTCATCAACTAAAAAAGATAATAATTCAAGTAAGCCTAAAGACCCATTTGCTGGG
TCAGGTGATACTATTGATATCTCAGATGATGATCTTCCGTTTTAA
ATGATTAATAGAGCTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTGCGTACTACTGGCAGTGGAATCTCAGTTGC
TACGTTTACTCTCGCTGTTGATCGTCAATATACTAATGCCCAAGGTGAGAGGGGCGCAGACTTTATCAGCTGTGTAATTT
GGAGAAAGGCTGCAGAAAATTTCTGTAACTTTACCTCAAAAGGATCATTGGTTGGTATTGATGGCCGGATTCAAACCAGG
AGTTACGATAATAAAGACGGGCAACGAGTTTATGTCACTGAAGTTGTAGTAGACAACTTCGCATTGCTCGAATCACGTAA
AAATCGTGAATCCCGTGGGCAAAATGGTGATTTTCCACCAGCACCAAATAATAATGGGAATGCTGGCACTCAAAGTACTA
ACAATTCTCAAACTAATGGAACCCCGTCATCAACTAAAAAAGATAATAATTCAAGTAAGCCTAAAGACCCATTTGCTGGG
TCAGGTGATACTATTGATATCTCAGATGATGATCTTCCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.364 |
100 |
0.621 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50.279 |
100 |
0.517 |