Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GOM46_RS02870 Genome accession   NZ_CP046525
Coordinates   567924..569882 (+) Length   652 a.a.
NCBI ID   WP_235083962.1    Uniprot ID   -
Organism   Streptococcus infantis strain SO     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 562924..574882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM46_RS02850 (GOM46_02835) - 563381..563893 (+) 513 WP_235083958.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  GOM46_RS02855 (GOM46_02840) - 563877..564527 (+) 651 WP_235083959.1 DUF1803 domain-containing protein -
  GOM46_RS02860 (GOM46_02845) - 564562..566007 (-) 1446 WP_235083960.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  GOM46_RS02865 (GOM46_02850) - 566113..567735 (+) 1623 WP_235083961.1 polysaccharide biosynthesis protein -
  GOM46_RS02870 (GOM46_02855) amiA 567924..569882 (+) 1959 WP_235083962.1 peptide ABC transporter substrate-binding protein Regulator
  GOM46_RS02875 (GOM46_02860) - 570028..571122 (+) 1095 WP_235083963.1 cystathionine gamma-synthase -
  GOM46_RS02880 (GOM46_02865) - 571130..572296 (+) 1167 WP_235083964.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72276.27 Da        Isoelectric Point: 4.6674

>NTDB_id=405063 GOM46_RS02870 WP_235083962.1 567924..569882(+) (amiA) [Streptococcus infantis strain SO]
MKKSKAKYLTLAGVALSAGLLLAACSNSASSTKTYNYVYGNDPSSLNYLLENRATTGDVVTNLVDGLMENDQYGNYIPSL
AEDWTVSKDGLTYTYKLRKDAKWYTADGEEYAPVTAQDFVTGLKYAADKNSEALYLVQDSVAGLADYVSGKTTDFSTVGV
KAIDDQTVQYTLTQPEPYWNSKTTATILFPVNSDFLNSKGDDFGKVDPANILYNGPFILKSFTSKSVLEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFSEGVYSFARLYPNSSSFAGVQEKYKDNIIYSMQTATSFYFNFNLDRKSYNHTSKTT
DAEKTAQQEAVLNKSFRQAINFAYDRTAYGAQSQGEEGATKIIRNLLVPPSFVTLDGKDFGDVVASKMVNYGQVWKNVNF
ADAQDAYYNADKAKEAFAQAKKELEAKGVQFPIHLDLPVDQSYKKGVQEASSFKQSIESVLGADNVVIDIQMLSTEEMDS
IGYLANTAAQKDYDLYNGGWSPDYQDPSTYLDTLNLTNGGSLQNLGLEPGESNAKATAVGLDTYTKMLEEANAEQDLNKR
YDKYAEAQAWLVDSSLTLPSVSLGGTPGIRKTVPFSAAFSQAGNKGVESYKYVKLQDKIVTTAEYEEARQKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=405063 GOM46_RS02870 WP_235083962.1 567924..569882(+) (amiA) [Streptococcus infantis strain SO]
ATGAAAAAGTCTAAGGCAAAATATCTGACGCTAGCAGGCGTTGCCCTAAGTGCCGGTCTGCTATTGGCGGCTTGTAGCAA
CTCAGCTAGTTCTACAAAGACATATAATTATGTATATGGTAATGACCCCTCAAGTCTTAACTATCTCCTAGAAAACCGTG
CAACAACAGGTGATGTTGTGACAAACTTGGTTGATGGTTTGATGGAAAATGATCAATACGGGAACTACATTCCTTCATTG
GCAGAAGATTGGACTGTTTCCAAAGATGGTTTGACTTATACTTACAAACTTCGTAAGGACGCCAAATGGTATACAGCAGA
TGGTGAAGAGTATGCACCAGTGACAGCACAAGATTTTGTGACAGGATTGAAGTATGCTGCGGATAAAAATTCAGAAGCCT
TGTATCTAGTGCAAGATTCTGTTGCTGGTTTGGCAGACTATGTTAGCGGAAAAACTACAGACTTTTCAACAGTTGGAGTA
AAAGCTATTGACGACCAGACTGTTCAATATACTTTGACTCAACCAGAACCTTATTGGAATTCAAAAACAACTGCAACTAT
TCTGTTCCCAGTAAATTCTGATTTCTTGAACTCAAAAGGGGATGATTTTGGTAAGGTGGATCCAGCAAACATCTTGTATA
ATGGTCCATTTATTCTCAAATCATTCACTTCGAAATCTGTACTTGAATACAAGAAAAATCCAAACTATTGGGATGCAAAA
AATGTATTTGTAGATGATGTCAAGTTGACTTACTATGATGGAAGCGACCAAGATGCGCTTGTTCGTAACTTTAGCGAAGG
TGTCTATAGTTTTGCCCGTCTCTATCCAAATAGTTCAAGTTTTGCAGGTGTGCAAGAGAAATACAAGGATAATATCATCT
ATAGTATGCAAACTGCGACTTCTTTCTACTTTAACTTTAACCTAGATAGAAAATCATATAACCATACATCAAAAACGACA
GATGCTGAAAAGACAGCCCAACAAGAAGCAGTCTTAAACAAATCATTCCGTCAAGCCATTAACTTTGCCTATGACCGTAC
AGCTTATGGTGCTCAGTCACAAGGGGAAGAGGGAGCAACAAAGATCATCAGAAATTTGCTCGTTCCACCTTCATTTGTAA
CACTTGATGGTAAAGATTTTGGTGATGTCGTAGCTTCTAAGATGGTTAACTACGGCCAAGTATGGAAAAATGTGAACTTT
GCAGATGCACAAGATGCCTACTATAATGCTGATAAGGCTAAAGAAGCTTTTGCACAAGCCAAAAAAGAATTGGAAGCTAA
AGGCGTACAATTCCCTATTCACCTAGACTTGCCAGTAGACCAATCATATAAGAAGGGTGTCCAAGAGGCAAGTTCCTTCA
AACAATCTATCGAGTCTGTCTTGGGTGCAGATAATGTCGTCATCGATATTCAAATGTTGAGCACTGAAGAAATGGATAGC
ATCGGTTACCTTGCCAATACAGCGGCTCAAAAAGACTATGACCTCTACAATGGTGGTTGGAGTCCTGACTACCAGGATCC
ATCAACCTATCTTGATACCCTTAACCTTACAAATGGTGGTTCATTGCAAAACCTTGGCTTAGAACCTGGTGAAAGTAATG
CTAAAGCAACTGCGGTTGGCTTGGATACCTACACTAAGATGCTAGAAGAAGCCAATGCTGAACAAGATTTGAACAAACGT
TATGACAAATACGCTGAAGCACAAGCTTGGTTAGTGGATAGCTCTCTCACGCTTCCAAGCGTATCTCTTGGTGGAACACC
AGGAATCAGAAAAACAGTTCCATTCTCTGCTGCTTTCTCTCAAGCGGGTAACAAGGGTGTTGAGTCTTACAAATACGTTA
AGTTACAAGATAAGATTGTGACAACAGCTGAGTATGAAGAAGCTAGACAAAAATGGCTGAAAGAAAAAGAAGAATCTAAT
AAAAAAGCCCAAGAAGAATTAGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

58.207

100

0.587
  amiA3 Streptococcus thermophilus LMG 18311

58.118

100

0.587
  amiA3 Streptococcus thermophilus LMD-9

57.815

100

0.584

Multiple sequence alignment