Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   GOM47_RS08030 Genome accession   NZ_CP046524
Coordinates   1595697..1597679 (-) Length   660 a.a.
NCBI ID   WP_235080466.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   binding to XIP (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 1597989..1606408 1595697..1597679 flank 310


Gene organization within MGE regions


Location: 1595697..1606408
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS08030 (GOM47_08025) amiA3 1595697..1597679 (-) 1983 WP_235080466.1 peptide ABC transporter substrate-binding protein Regulator
  GOM47_RS08035 (GOM47_08030) tagD 1597989..1598381 (-) 393 WP_044812580.1 glycerol-3-phosphate cytidylyltransferase -
  GOM47_RS08040 (GOM47_08035) - 1598495..1599946 (-) 1452 WP_235080467.1 lipopolysaccharide biosynthesis protein -
  GOM47_RS08045 (GOM47_08040) - 1599915..1601102 (-) 1188 WP_235080468.1 CDP-glycerol glycerophosphotransferase family protein -
  GOM47_RS08050 (GOM47_08045) - 1601112..1601612 (-) 501 WP_235080469.1 acyltransferase -
  GOM47_RS08055 (GOM47_08050) - 1601606..1602775 (-) 1170 WP_235080470.1 O-antigen ligase family protein -
  GOM47_RS08060 (GOM47_08055) - 1602775..1603494 (-) 720 WP_235080471.1 glycosyltransferase family 32 protein -
  GOM47_RS08065 (GOM47_08060) - 1603759..1604229 (-) 471 WP_235080472.1 DapH/DapD/GlmU-related protein -
  GOM47_RS08070 (GOM47_08065) - 1604226..1605338 (-) 1113 WP_235080473.1 glycosyltransferase family 1 protein -
  GOM47_RS08075 (GOM47_08070) - 1605480..1605959 (-) 480 WP_235080474.1 glycosyltransferase -
  GOM47_RS08080 (GOM47_08075) pssD 1605959..1606408 (-) 450 WP_235080475.1 PssD/Cps14F family polysaccharide biosynthesis glycosyltransferase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73179.71 Da        Isoelectric Point: 4.7303

>NTDB_id=405006 GOM47_RS08030 WP_235080466.1 1595697..1597679(-) (amiA3) [Streptococcus oralis strain SOT]
MKSSKLFALAGVTLLAAATLAACSGSGSSAKGEKTFSYIYETDPDNLNYLTTGKAATADITSNVIDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTLRKDAKWYTSEGEEYAEVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEIKDFSQVG
IKALDDQTIQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKGTDPSSILYNGPFLLKSIVAKSSVEFEKNPNYWD
KDNVHINKVKLSFWDGQDTNKPTEAFKDGSFTMARLFPTSASYPETEKAFKDNIVYTQQDSTTYLVGTNIDRQSYKYTSK
TTDEEKTSTKKALLNKDFRQALSFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGELVKEKLVTYGDEWKDV
NLADAQDGLYNPDKAKAEFAKAKTALQAEGVKFPIHLDMPVDQTNTTKVQRVQSFKQSLEATLGSENVVVDIQQLQKDDV
LNITYFAKTAAGEDWDISDNVGWSPDFADPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEEVS
DVSKRYEKYAAAQAWLTDSALIIPTTSKTGRPMLSKMVPFTLPFAYSGNKGTSEALLYKYLEVQDKAVTVDEYQKAQEKW
LKEKEESNKKAQEDLANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=405006 GOM47_RS08030 WP_235080466.1 1595697..1597679(-) (amiA3) [Streptococcus oralis strain SOT]
ATGAAAAGTTCAAAACTATTTGCCCTTGCGGGTGTAACCTTGTTGGCAGCTGCGACTCTAGCTGCTTGCTCTGGATCAGG
ATCGAGCGCTAAAGGAGAGAAGACATTCTCATATATCTATGAAACAGACCCTGACAACCTCAACTATTTGACAACTGGTA
AGGCAGCAACTGCTGACATTACTAGTAATGTGATTGATGGATTGCTTGAAAATGACCGCTATGGTAACTTTGTGCCATCT
ATGGCTGAGGATTGGTCTGTATCTAAGGACGGCTTGACTTACACATATACGCTTCGTAAGGATGCAAAATGGTATACCTC
TGAAGGTGAGGAATACGCAGAAGTCAAAGCTCAAGACTTTGTAACAGGGCTTAAATATGCTGCTGATAAAAAATCTGATG
GTCTTTATCTTGTTCAGGAATCAATCAAAGGCTTGGACGCTTATGTGAAAGGTGAAATTAAAGATTTCTCACAAGTTGGT
ATTAAGGCTCTTGATGATCAAACAATTCAGTACACTTTGAACAAGCCAGAAAGCTTCTGGAATTCTAAGACAACGATGGG
AGTTTTGGCTCCAGTAAATGAAGAGTTCTTAAACTCTAAAGGGGATGATTTCGCTAAAGGAACAGATCCAAGTAGCATCC
TATACAATGGACCATTCTTGCTCAAATCTATCGTAGCTAAATCTTCTGTTGAGTTTGAAAAAAATCCAAACTACTGGGAT
AAGGACAATGTCCATATCAATAAGGTTAAATTATCATTCTGGGATGGTCAAGATACCAACAAACCAACCGAAGCTTTCAA
AGATGGCAGCTTTACAATGGCGCGTCTCTTCCCAACAAGCGCTAGCTACCCAGAGACTGAAAAAGCATTTAAAGACAATA
TTGTTTACACACAACAAGATTCTACTACTTATTTAGTAGGTACTAATATTGATCGCCAGTCTTATAAGTATACTTCTAAG
ACAACGGATGAAGAAAAAACATCAACCAAGAAAGCTCTTCTAAACAAAGATTTCCGTCAAGCTCTTTCCTTTGGTTTTGA
TAGAACCGCCTATGCCTCTCAAGTAAACGGTGCAAGTGGTGCGACTAAACTGCTTCGTAACTTGTTTGTTCCTCCTACAT
TTGTACAGGCAGATGGAAAAAACTTTGGTGAGTTAGTAAAAGAAAAATTGGTGACATACGGTGACGAGTGGAAGGATGTG
AACTTAGCTGATGCTCAGGATGGACTCTACAATCCAGATAAGGCCAAAGCAGAATTTGCAAAAGCCAAAACAGCTCTTCA
AGCAGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCTGTAGACCAAACCAATACAACAAAAGTTCAACGTGTTCAAT
CCTTCAAACAATCGCTTGAAGCTACTCTAGGGTCAGAGAACGTCGTTGTCGATATTCAACAACTTCAAAAAGATGATGTC
TTGAACATTACTTACTTTGCGAAAACAGCTGCTGGCGAAGATTGGGATATCTCAGATAACGTTGGATGGTCTCCAGACTT
TGCAGACCCATCTACTTACCTTGATATCATCAAGCCATCTGTCGGAGAAAATACAAAGACTTACCTAGGATTTGACTCTG
GAACAAACAACGCTGCAGCGAAGCAAGTTGGTTTGGAAGACTACGAAAAAATGGTTGTAGAAGCCGGGGAAGAAGTGAGT
GACGTTTCAAAACGTTATGAGAAATATGCTGCTGCCCAAGCATGGTTGACCGACAGTGCCTTAATCATCCCAACAACTTC
TAAAACTGGTCGTCCAATGTTGTCTAAGATGGTACCATTTACACTTCCGTTTGCATACTCTGGTAACAAGGGTACGAGCG
AAGCCCTCTTGTACAAATATCTAGAAGTTCAGGATAAAGCTGTGACAGTTGATGAGTATCAAAAAGCTCAAGAAAAATGG
TTGAAAGAAAAAGAAGAGTCAAATAAAAAGGCTCAAGAAGATCTCGCAAACCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.607

100

0.597
  amiA3 Streptococcus thermophilus LMG 18311

59.002

100

0.591
  amiA Streptococcus salivarius strain HSISS4

58.245

100

0.583

Multiple sequence alignment