Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GOM47_RS04870 Genome accession   NZ_CP046524
Coordinates   946734..947543 (+) Length   269 a.a.
NCBI ID   WP_235081244.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 941734..952543
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS04850 (GOM47_04850) pta 942391..943365 (+) 975 WP_235081240.1 phosphate acetyltransferase -
  GOM47_RS04855 (GOM47_04855) mutY 943448..944626 (+) 1179 WP_235081241.1 A/G-specific adenine glycosylase -
  GOM47_RS04860 (GOM47_04860) micA 944683..945390 (+) 708 WP_235081242.1 response regulator YycF Regulator
  GOM47_RS04865 (GOM47_04865) micB 945383..946732 (+) 1350 WP_235081243.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GOM47_RS04870 (GOM47_04870) vicX 946734..947543 (+) 810 WP_235081244.1 MBL fold metallo-hydrolase Regulator
  GOM47_RS04875 (GOM47_04875) - 947575..947922 (-) 348 WP_235081245.1 thioredoxin -
  GOM47_RS04880 (GOM47_04880) - 948033..949751 (-) 1719 WP_235081246.1 phospho-sugar mutase -
  GOM47_RS04885 (GOM47_04885) - 949906..951807 (+) 1902 WP_235081247.1 ABC-F family ATP-binding cassette domain-containing protein -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29886.88 Da        Isoelectric Point: 6.1738

>NTDB_id=404991 GOM47_RS04870 WP_235081244.1 946734..947543(+) (vicX) [Streptococcus oralis strain SOT]
MSEIGFKYSILASGSSGNSFYLETPKKKILVDAGLSGKKIASLLSEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAVAPQFYRFMKDDKSFVILTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGAEAMIRAMGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=404991 GOM47_RS04870 WP_235081244.1 946734..947543(+) (vicX) [Streptococcus oralis strain SOT]
ATGAGTGAAATAGGCTTTAAATACAGTATTTTAGCATCAGGTTCCAGTGGAAATTCATTTTATCTGGAAACACCGAAAAA
GAAAATCTTAGTAGACGCAGGTTTGTCTGGTAAGAAAATTGCTAGCCTGCTAAGCGAAATAAACCGTAAACCAGAAGATT
TGGATGCTATTTTAATTACGCACGAACACTCTGACCATATCCATGGTGTTGGGGTACTTGCTCGTAAGTACGGCATGGAT
CTTTATGCCAATGAAAAAACCTGGCAGGCTATGGAAAATAGCAAGTACCTCGGTAAGGTGGATTCATCGCAGAAGCACAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGCGATATTGATATTGAGAGTTTTGGTGTCAGCCATGATGCAGTCGCACCGC
AGTTCTATCGCTTTATGAAGGATGATAAGAGTTTTGTCATACTGACTGATACAGGTTATGTTAGTGACCGTATGGCAGGG
ATTGTCGAGAATGCTGACGGTTACCTCATTGAGTCCAACCACGATGTGGAGATCTTGCGAGCAGGTTCTTACGCTTGGCG
ACTCAAACAGCGAATCTTATCTGATCTTGGTCACCTCTCTAACGAAGACGGTGCTGAGGCCATGATTCGTGCAATGGGAA
ATCGGACTAAGAAAATCTATCTTGGTCACTTGTCCAAAGAGAACAATATCAAGGAGCTGGCTCATATGACCATGGTCAAT
CAGCTAGCCCAAGCTGATCTGGGAGTAGGAGTAGACTTTAAGGTTTACGATACCTCTCCCGATACAGCAACACCACTGAC
AGATATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.323

100

0.773

Multiple sequence alignment